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Update of security.py to allow JWT implementation #157

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Update of security.py to allow JWT implementation #157

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d356cd7
Removed assigner from backend
puehringer Jan 26, 2022
d6d0a20
Allow mapping of idtypes to themselves
puehringer Feb 25, 2022
9b6c1df
Changed documentation of mapping manager.
puehringer Feb 28, 2022
6167617
Merge branch 'develop' into remove_internal_ids
puehringer Feb 28, 2022
9499eaf
Removed unused security store function
puehringer Mar 7, 2022
c51d1ec
Cleanup user model
puehringer Apr 1, 2022
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132 changes: 0 additions & 132 deletions .yo-rc.json
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Original file line number Diff line number Diff line change
Expand Up @@ -35,135 +35,12 @@
"factory": "create_idtype"
}
},
{
"type": "dataset-specific-handler",
"id": "handler-table",
"module": "dataset_specific",
"extras": {
"datatype": "table",
"factory": "add_table_handler"
}
},
{
"type": "dataset-specific-handler",
"id": "handler-matrix",
"module": "dataset_specific",
"extras": {
"datatype": "matrix",
"factory": "add_matrix_handler"
}
},
{
"type": "dataset-specific-handler",
"id": "handler-vector",
"module": "dataset_specific",
"extras": {
"datatype": "vector",
"factory": "add_vector_handler"
}
},
{
"type": "table-formatter",
"id": "formatter-json",
"module": "dataset_specific",
"extras": {
"format": "json",
"factory": "format_json"
}
},
{
"type": "table-formatter",
"id": "formatter-csv",
"module": "dataset_specific",
"extras": {
"format": "csv",
"factory": "format_csv"
}
},
{
"type": "matrix-formatter",
"id": "formatter-json",
"module": "dataset_specific",
"extras": {
"format": "json",
"factory": "format_json"
}
},
{
"type": "matrix-formatter",
"id": "formatter-csv",
"module": "dataset_specific",
"extras": {
"format": "csv",
"factory": "format_csv"
}
},
{
"type": "matrix-formatter",
"id": "formatter-image",
"module": "dataset_specific",
"extras": {
"format": "png",
"factory": "format_image"
}
},
{
"type": "matrix-formatter",
"id": "formatter-image",
"module": "dataset_specific",
"extras": {
"format": "jpeg",
"factory": "format_image"
}
},
{
"type": "matrix-formatter",
"id": "formatter-image",
"module": "dataset_specific",
"extras": {
"format": "jpg",
"factory": "format_image"
}
},
{
"type": "vector-formatter",
"id": "formatter-json",
"module": "dataset_specific",
"extras": {
"format": "json",
"factory": "format_json"
}
},
{
"type": "vector-formatter",
"id": "formatter-csv",
"module": "dataset_specific",
"extras": {
"format": "csv",
"factory": "format_csv"
}
},
{
"type": "dataset-provider",
"id": "dataset-csv",
"module": "dataset_csv",
"extras": {}
},
{
"type": "json-encoder",
"id": "numpy",
"module": "json_encoder",
"extras": {}
},
{
"type": "manager",
"id": "idmanager",
"module": "assigner",
"extras": {
"factory": "create",
"singleton": true
}
},
{
"type": "dataset-specific-handler",
"id": "handler-graph",
Expand All @@ -173,15 +50,6 @@
"factory": "add_graph_handler"
}
},
{
"type": "graph-formatter",
"id": "formatter-json",
"module": "graph_api",
"extras": {
"format": "json",
"factory": "format_json"
}
},
{
"type": "graph-parser",
"id": "parser-json",
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51 changes: 0 additions & 51 deletions phovea_server/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -21,61 +21,10 @@ def phovea(registry):
'namespace': '/api/idtype',
'factory': 'create_idtype'
})
registry.append('dataset-specific-handler', 'handler-table', 'phovea_server.dataset_specific', {
'datatype': 'table',
'factory': 'add_table_handler'
})
registry.append('dataset-specific-handler', 'handler-matrix', 'phovea_server.dataset_specific', {
'datatype': 'matrix',
'factory': 'add_matrix_handler'
})
registry.append('dataset-specific-handler', 'handler-vector', 'phovea_server.dataset_specific', {
'datatype': 'vector',
'factory': 'add_vector_handler'
})
registry.append('table-formatter', 'formatter-json', 'phovea_server.dataset_specific', {
'format': 'json',
'factory': 'format_json'
})
registry.append('table-formatter', 'formatter-csv', 'phovea_server.dataset_specific', {
'format': 'csv',
'factory': 'format_csv'
})
registry.append('matrix-formatter', 'formatter-json', 'phovea_server.dataset_specific', {
'format': 'json',
'factory': 'format_json'
})
registry.append('matrix-formatter', 'formatter-csv', 'phovea_server.dataset_specific', {
'format': 'csv',
'factory': 'format_csv'
})
registry.append('matrix-formatter', 'formatter-image', 'phovea_server.dataset_specific', {
'format': 'png',
'factory': 'format_image'
})
registry.append('matrix-formatter', 'formatter-image', 'phovea_server.dataset_specific', {
'format': 'jpeg',
'factory': 'format_image'
})
registry.append('matrix-formatter', 'formatter-image', 'phovea_server.dataset_specific', {
'format': 'jpg',
'factory': 'format_image'
})
registry.append('vector-formatter', 'formatter-json', 'phovea_server.dataset_specific', {
'format': 'json',
'factory': 'format_json'
})
registry.append('vector-formatter', 'formatter-csv', 'phovea_server.dataset_specific', {
'format': 'csv',
'factory': 'format_csv'
})
registry.append('dataset-provider', 'dataset-csv', 'phovea_server.dataset_csv')
registry.append('json-encoder', 'numpy', 'phovea_server.json_encoder')
registry.append('json-encoder', 'set-encoder', 'phovea_server.set_encoder', {})

registry.append('manager', 'idmanager', 'phovea_server.assigner', dict(singleton=True))
registry.append('manager', 'mappingmanager', 'phovea_server.mapper', dict(singleton=True))
registry.append('mapping_provider', 'csv', 'phovea_server.mapping_csv')

registry.append('dataset-specific-handler', 'handler-graph', 'phovea_server.graph_api', {
'datatype': 'graph',
Expand Down
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