renamed LPJmLClimateInput function calls

.buildlibrary

@@ -1,4 +1,4 @@
-ValidationKey: '4634370'
+ValidationKey: '4674852'
 AcceptedWarnings:
 - 'Warning: package ''.*'' was built under R version'
 - 'Warning: namespace ''.*'' is not available and has been replaced'

.pre-commit-config.yaml

@@ -15,7 +15,7 @@ repos:
     -   id: mixed-line-ending
 
 -   repo: https://github.com/lorenzwalthert/precommit
-    rev: 7910e0323d7213f34275a7a562b9ef0fde8ce1b9  # frozen: v0.4.2
+    rev: bae853d82da476eee0e0a57960ee6b741a3b3fb7  # frozen: v0.4.3
     hooks:
     -   id: parsable-R
     -   id: deps-in-desc

CITATION.cff

@@ -2,8 +2,8 @@ cff-version: 1.2.0
 message: If you use this software, please cite it using the metadata from this file.
 type: software
 title: 'mrsoil: MadRat Soil Organic Carbon Budget Library'
-version: 2.3.3
-date-released: '2024-06-16'
+version: 2.3.4
+date-released: '2024-09-12'
 abstract: This packages provides functions for soil organic carbon budget for mineral
   soils using the steady-state method (Tier 2) of the 2019 Refinement to the 2006
   IPP Guidelines for National Greenhouse Gas Inventories.

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: mrsoil
 Type: Package
 Title: MadRat Soil Organic Carbon Budget Library
-Version: 2.3.3
-Date: 2024-06-16
+Version: 2.3.4
+Date: 2024-09-12
 Authors@R: c(person("Kristine", "Karstens", email = "karstens@pik-potsdam.de", role = c("aut","cre")),
              person("Jan Philipp", "Dietrich", email = "dietrich@pik-potsdam.de", role = "aut"))
 Description: This packages provides functions for soil organic carbon budget for mineral soils using the steady-state method (Tier 2) of the 2019 Refinement to the 2006 IPP Guidelines for National Greenhouse Gas Inventories.
@@ -25,10 +25,8 @@ URL: https://github.com/pik-piam/mrsoil, https://doi.org/10.5281/zenodo.4317933
 BugReports: https://github.com/pik-piam/mrsoil/issues
 Encoding: UTF-8
 LazyData: no
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Suggests: 
-    knitr,
     rmarkdown,
     ggplot2,
     covr
-VignetteBuilder: knitr

R/calcTempEffectDecomposition.R

@@ -28,7 +28,7 @@ calcTempEffectDecomposition <- function(lpjmlNatveg = "LPJmL4_for_MAgPIE_44ac93d
   paramTopt <- param[, , "topt"]
   paramTa   <- param[, , "ta"]
   paramTb   <- param[, , "tb"]
-  cellTemp  <- calcOutput("LPJmLClimateInput", climatetype  = climatetype,
+  cellTemp  <- calcOutput("LPJmLClimateInput_new", climatetype  = climatetype,
                           variable     = "temperature:monthlyMean",
                           stage        = stage,
                           lpjmlVersion = lpjmlNatveg,

R/calcWaterEffectDecomposition.R

@@ -36,7 +36,7 @@ calcWaterEffectDecomposition <- function(irrigation  = "mixedirrig",
     paramWslope     <- setYears(param[, , "wfacpar2"], NULL)
     paramWslope2    <- setYears(param[, , "wfacpar3"], NULL)
 
-    cellPrep   <- calcOutput("LPJmLClimateInput", climatetype  = climatetype,
+    cellPrep   <- calcOutput("LPJmLClimateInput_new", climatetype  = climatetype,
                              variable     = "precipitation:monthlySum",
                              stage        = stage,
                              lpjmlVersion = lpjmlNatveg,

README.md

@@ -1,6 +1,6 @@
 # MadRat Soil Organic Carbon Budget Library
 
-R package **mrsoil**, version **2.3.3**
+R package **mrsoil**, version **2.3.4**
 
 [![CRAN status](https://www.r-pkg.org/badges/version/mrsoil)](https://cran.r-project.org/package=mrsoil) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4317933.svg)](https://doi.org/10.5281/zenodo.4317933) [![R build status](https://github.com/pik-piam/mrsoil/workflows/check/badge.svg)](https://github.com/pik-piam/mrsoil/actions) [![codecov](https://codecov.io/gh/pik-piam/mrsoil/branch/master/graph/badge.svg)](https://app.codecov.io/gh/pik-piam/mrsoil) [![r-universe](https://pik-piam.r-universe.dev/badges/mrsoil)](https://pik-piam.r-universe.dev/builds)
 
@@ -38,7 +38,7 @@ In case of questions / problems please contact Kristine Karstens <karstens@pik-p
 
 To cite package **mrsoil** in publications use:
 
-Karstens K, Dietrich J (2024). _mrsoil: MadRat Soil Organic Carbon Budget Library_. doi:10.5281/zenodo.4317933 <https://doi.org/10.5281/zenodo.4317933>, R package version 2.3.3, <https://github.com/pik-piam/mrsoil>.
+Karstens K, Dietrich J (2024). _mrsoil: MadRat Soil Organic Carbon Budget Library_. doi:10.5281/zenodo.4317933 <https://doi.org/10.5281/zenodo.4317933>, R package version 2.3.4, <https://github.com/pik-piam/mrsoil>.
 
 A BibTeX entry for LaTeX users is
 
@@ -47,8 +47,8 @@ A BibTeX entry for LaTeX users is
   title = {mrsoil: MadRat Soil Organic Carbon Budget Library},
   author = {Kristine Karstens and Jan Philipp Dietrich},
   year = {2024},
-  note = {R package version 2.3.3},
-  doi = {10.5281/zenodo.4317933},
+  note = {R package version 2.3.4},
   url = {https://github.com/pik-piam/mrsoil},
+  doi = {10.5281/zenodo.4317933},
 }
 ```