v1.5.1 fix path script build-custom (#246)

* v1.5.1 fix path script build-custom

* gu v0.6.1

CMakeLists.txt

@@ -3,7 +3,7 @@
 # =============================================================================
 
 cmake_minimum_required( VERSION 3.10 FATAL_ERROR )
-project( ganon VERSION 1.5.0 LANGUAGES CXX )
+project( ganon VERSION 1.5.1 LANGUAGES CXX )
 
 # -----------------------------------------------------------------------------
 # build setup

setup.py

@@ -13,7 +13,7 @@ def read(filename):
 
 setup(
     name="ganon",
-    version="1.5.0",
+    version="1.5.1",
     url="https://www.github.com/pirovc/ganon",
     license='MIT',
     author="Vitor C. Piro",

src/ganon/config.py

@@ -8,7 +8,7 @@
 
 class Config:
 
-    version = "1.5.0"
+    version = "1.5.1"
     path_exec = {"build": "", "classify": "", "get_seq_info": "", "genome_updater": ""}
     empty = False
 
@@ -463,15 +463,8 @@ def validate(self):
     def set_paths(self):
         missing_path = False
         self.ganon_path = self.ganon_path + "/" if self.ganon_path else ""
-        if self.which in ["build", "update"]:
-            ganon_get_seq_info_paths = [self.ganon_path, self.ganon_path+"scripts/", self.ganon_path+"../scripts/"] if self.ganon_path else [None, "scripts/"]
-            for p in ganon_get_seq_info_paths:
-                self.path_exec["get_seq_info"] = shutil.which("ganon-get-seq-info.sh", path=p)
-                if self.path_exec["get_seq_info"] is not None: break
-            if self.path_exec["get_seq_info"] is None:
-                print_log("ganon-get-seq-info.sh script was not found. Please inform a specific path with --ganon-path")
-                missing_path = True
 
+        if self.which in ["build", "update", "build-custom"]:
             ganon_genome_updater_paths = [self.ganon_path, self.ganon_path+"libs/genome_updater/", self.ganon_path+"../libs/genome_updater/"] if self.ganon_path else [None, "libs/genome_updater/"]
             for p in ganon_genome_updater_paths:
                 self.path_exec["genome_updater"] = shutil.which("genome_updater.sh", path=p)
@@ -480,8 +473,14 @@ def set_paths(self):
                 print_log("genome_updater.sh was not found. Please inform a specific path with --ganon-path")
                 missing_path = True
 
+            ganon_get_seq_info_paths = [self.ganon_path, self.ganon_path+"scripts/", self.ganon_path+"../scripts/"] if self.ganon_path else [None, "scripts/"]
+            for p in ganon_get_seq_info_paths:
+                self.path_exec["get_seq_info"] = shutil.which("ganon-get-seq-info.sh", path=p)
+                if self.path_exec["get_seq_info"] is not None: break
+            if self.path_exec["get_seq_info"] is None:
+                print_log("ganon-get-seq-info.sh script was not found. Please inform a specific path with --ganon-path")
+                missing_path = True
 
-        if self.which in ["build-custom"]:
             # if path is given, look for binaries only there
             ganon_build_paths = [self.ganon_path, self.ganon_path+"build/"] if self.ganon_path else [None, "build/"]
             for p in ganon_build_paths:
@@ -491,7 +490,7 @@ def set_paths(self):
                 print_log("ganon-build binary was not found. Please inform a specific path with --ganon-path")
                 missing_path = True
 
-            if self.hibf:
+            if hasattr(self, 'hibf') and self.hibf:
                 self.raptor_path = self.raptor_path + "/" if self.raptor_path else ""
                 raptor_paths = [self.raptor_path, self.raptor_path+"build/bin/"] if self.raptor_path else [None, "build/"]
                 for p in raptor_paths:
@@ -501,7 +500,6 @@ def set_paths(self):
                     print_log("raptor binary was not found. Please inform a specific path with --raptor-path")
                     missing_path = True
 
-
         if self.which in ["classify"]:
             ganon_classify_paths = [self.ganon_path, self.ganon_path+"build/"] if self.ganon_path else [None, "build/"]
             for p in ganon_classify_paths: