Piyal Karunarathne, Qiujie Zhou, Klaus Schliep, and Pascal Milesi
rCNV was designed to identify duplicates (CNV) from SNPs data with ease.
For a comprehensive tutorial on the package, go to https://piyalkarum.github.io/rCNV/ and navigate to “Get started” where all the functions and usage are explained with ample examples.
- CRAN link https://cran.r-project.org/package=rCNV
install.packages("rCNV")
- You can install the development version of rCNV from GitHub with:
if (!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("piyalkarum/rCNV", build_vignettes = TRUE)
Please don’t forget to cite us if you use the package.
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Karunarathne P, Zhou Q, Schliep K, Milesi P. A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: 'rCNV', a versatile r package for paralogue and CNV detection. Mol Ecol Resour. 2023 Jul 29. doi:http://doi.org/10.1111/1755-0998.13843
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Karunarathne, P., Zhou, Q., Schliep, K., & Milesi, P. (2022). A new framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile R package for paralogs and CNVs detection. BioRxiv, 2022.10.14.512217. doi:http://doi.org/10.1101/2022.10.14.512217
