Ver4/langgraph

.dockerignore

@@ -0,0 +1,49 @@
+# Python
+__pycache__
+*.py[cod]
+*$py.class
+*.so
+.Python
+env/
+venv/
+*.egg-info/
+dist/
+build/
+
+# IDEs
+.vscode
+.idea
+*.swp
+*.swo
+*~
+
+# OS
+.DS_Store
+.env
+.env.local
+
+# Docker
+.dockerignore
+Dockerfile
+
+# Git
+.git
+.gitignore
+
+# Frontend (don't need for backend build)
+node_modules/
+plexe/ui/frontend/dist/
+npm-debug.log
+
+# Test & coverage
+.pytest_cache
+.coverage
+htmlcov/
+
+# MLflow
+mlruns/
+
+# Misc
+*.log
+.cache/
+workdir/

.env.example

@@ -0,0 +1,38 @@
+# Postgres
+POSTGRES_USER=mlflow
+POSTGRES_PASSWORD=mlflow
+POSTGRES_DB=mlflow_db
+
+# MLflow backend store URI (used by mlflow server and backend if you want to track experiments)
+# Example: postgresql+psycopg2://mlflow:mlflow@localhost:5432/mlflow_db
+MLFLOW_BACKEND_STORE_URI=postgresql+psycopg2://mlflow:mlflow@postgres:5432/mlflow_db
+
+# MLflow tracking URI (URL where mlflow server is running)
+MLFLOW_TRACKING_URI=http://mlflow:5000
+MLFLOW_SERVER_ALLOWED_HOSTS=mlflow,localhost,127.0.0.1,localhost:5000,127.0.0.1:5000,mlflow:5000
+
+# Frontend environment
+# API URL for React frontend to connect to backend (adjust for your deployment)
+REACT_APP_API_URL=http://localhost:8000
+
+# pgAdmin credentials
+PGADMIN_EMAIL=admin@example.com
+PGADMIN_PASSWORD=admin
+
+PLEXE_CONVERSATIONAL_MODEL="gemini/gemini-2.5-flash"
+PLEXE_ORCHESTRATOR_MODEL="gemini/gemini-2.5-flash"
+PLEXE_ML_RESEARCHER_MODEL="gemini/gemini-2.5-flash"
+PLEXE_ML_ENGINEER_MODEL="gemini/gemini-2.5-flash"
+PLEXE_ML_OPS_ENGINEER_MODEL="gemini/gemini-2.5-flash"
+PLEXE_TOOL_MODEL="gemini/gemini-2.5-flash"
+PLEXE_TOOL_FEATURE_GENERATOR_MODEL="gemini/gemini-2.5-flash"
+
+# External API Keys for HPO Search and Literature Review
+# Semantic Scholar API: https://www.semanticscholar.org/product/api#Partner-Form
+SEMANTIC_SCHOLAR_API_KEY=your_semantic_scholar_api_key_here
+
+# OpenML API: https://www.openml.org/auth/sign-in
+OPENML_API_KEY=your_openml_api_key_here
+
+# Hugging Face Token: https://huggingface.co/settings/tokens
+HF_TOKEN=???

.gitignore

@@ -1,3 +1,4 @@
+plexe-old/
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]
@@ -168,6 +169,34 @@ cython_debug/
 #  option (not recommended) you can uncomment the following to ignore the entire idea folder.
 #.idea/
 
+# VSCode
+.vscode/
+*.code-workspace
+
+# Sublime Text
+*.sublime-project
+*.sublime-workspace
+
+# Vim
+*.swp
+*.swo
+*~
+.vim/
+
+# Emacs
+*~
+\#*\#
+.\#*
+
+# OS files
+.DS_Store
+.DS_Store?
+._*
+.Spotlight-V100
+.Trashes
+ehthumbs.db
+Thumbs.db
+
 # PyPI configuration file
 .pypirc
 
@@ -198,4 +227,93 @@ examples/datasets/*
 experiments/
 notebooks/
 
+# ============== DOCKER RELATED ==============
+# Docker build artifacts
+.docker/
+docker-compose.override.yml
+
+# ============== FRONTEND (NODE/REACT) ==============
+# Dependencies
+node_modules/
+plexe/ui/frontend/node_modules/
+
+# Production build
+plexe/ui/frontend/dist/
+plexe/ui/frontend/build/
+
+# Misc frontend
+plexe/ui/frontend/.env.local
+plexe/ui/frontend/.env.*.local
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+lerna-debug.log*
+
+# Frontend IDE
+plexe/ui/frontend/.idea/
+plexe/ui/frontend/.vscode/
+plexe/ui/frontend/*.swp
+
+# ============== BACKEND ARTIFACTS ==============
+# Generated model files
+*.pkl
+*.joblib
+*.h5
+*.pt
+*.pth
+*.onnx
+
+# Temporary files
+*.tmp
+*.temp
+*.bak
+*.backup
+
+# ============== DATABASE ==============
+# SQLite databases
+*.sqlite
+*.sqlite3
+*.db
+
+# ============== CREDENTIALS & SECRETS ==============
+# Environment files (but keep .env.example)
+.env
+.env.local
+.env.*.local
+.env.prod
+
+# API keys and secrets
+.aws/
+.gcloud/
+credentials.json
+secrets/
+
+# ============== PYTHON VIRTUAL ENVIRONMENTS ==============
+venv/
+env/
+ENV/
+.venv
+
+# ============== PACKAGE MANAGER LOCK FILES ==============
+# poetry.lock is typically committed, but you can ignore if preferred
+# poetry.lock
+
+# Keep poetry.lock for reproducible builds
+# (uncomment below if you prefer to ignore it)
+poetry.lock
 **/.claude/settings.local.json
+
+# Data folder
+data/
+data/uploads/
+data/uploads/*
+
+# temporal_datasets/*
+# temporal_datasets/
+# output_datasets/*
+# output_datasets/
+
+model-from-chat.tar.gz
+model_output_from_chat/
+
+.workdir/