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@populationgenomics

Centre for Population Genomics

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  1. production-pipelines production-pipelines Public

    Genomics workflows for CPG using Hail Batch

    Python 8 1

  2. talos talos Public

    Rare Disease variant reanalysis tool

    Python 8 7

  3. cpg-cost-control cpg-cost-control Public

    A Cloud Function to handle GCP billing budget notifications.

    Python 6 3

  4. cuKING cuKING Public

    CUDA-based KING relatedness estimation

    Cuda 6

  5. cpg-infrastructure cpg-infrastructure Public

    This repository is used to manage the infrastructure at the CPG

    Python 4 1

  6. saige-tenk10k saige-tenk10k Public

    Hail batch pipeline to run SAIGE on CPG's GCP

    Python 4 1

Repositories

Showing 10 of 79 repositories
  • production-pipelines Public

    Genomics workflows for CPG using Hail Batch

    populationgenomics/production-pipelines’s past year of commit activity
    Python 8 MIT 1 49 (1 issue needs help) 41 Updated May 18, 2025
  • metamist Public

    Sample level metadata system

    populationgenomics/metamist’s past year of commit activity
    Python 3 MIT 2 41 22 Updated May 18, 2025
  • gnomad-browser Public Forked from broadinstitute/gnomad-browser

    Explore gnomAD datasets on the web

    populationgenomics/gnomad-browser’s past year of commit activity
    TypeScript 0 MIT 49 0 2 Updated May 16, 2025
  • sv-workflows Public

    Structural Variation Workflows

    populationgenomics/sv-workflows’s past year of commit activity
    Python 1 MIT 1 2 11 Updated May 16, 2025
  • talos Public

    Rare Disease variant reanalysis tool

    populationgenomics/talos’s past year of commit activity
    Python 8 MIT 7 10 4 Updated May 16, 2025
  • seqr Public Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics

    populationgenomics/seqr’s past year of commit activity
    Python 3 AGPL-3.0 91 28 3 Updated May 16, 2025
  • cpg-flow-gcnv Public

    CPG-Flow implementation of the CPG gCNV Exome SV calling workflow

    populationgenomics/cpg-flow-gcnv’s past year of commit activity
    Python 0 MIT 0 0 1 Updated May 15, 2025
  • images Public

    Reusable single-software docker images

    populationgenomics/images’s past year of commit activity
    Dockerfile 1 MIT 2 1 10 Updated May 15, 2025
  • cpg-flow-gatk-sv Public

    CPG-Flow implementation of the GATK-SV pipeline, deployed at the Centre for Population Genomics

    populationgenomics/cpg-flow-gatk-sv’s past year of commit activity
    Python 0 MIT 0 0 1 Updated May 14, 2025
  • references Public

    Reference data for bioinformatics workflows

    populationgenomics/references’s past year of commit activity
    Python 1 MIT 2 4 4 Updated May 14, 2025
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