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- Updated __init__.pyi to include TraceMetrics in exports. - Implemented get_trace_metrics method in WidefieldAnalysis for analyzing 1D traces with detailed documentation and error handling.
- Introduced methods for estimating and applying motion correction, including `estimate_motion_vectors` and `apply_motion_correction`. - Added support for saving and loading motion vectors and reference images. - Updated __init__.pyi to export new motion-related functions. - Enhanced diagnostic plotting capabilities for motion correction analysis.
- Introduced `calculate_spatial_threshold_metrics` function for computing spatial threshold metrics on 2D activity images. - Updated documentation to reflect the new functionality and its parameters. - Modified __init__.pyi to export the new metrics function.
- Changed saved figure filenames from "02_motion_trajectory.png" to "motion_trajectory.png" and from "03_stability_maps.png" to "stability_maps.png". - Updated corresponding log messages to reflect the new filenames.
- Replaced np.diff with np.gradient for calculating first and second derivatives to enhance accuracy. - Updated variable names for clarity and consistency. - Adjusted logic for determining window start and end indices based on the new derivative calculations.
…io for Linux platforms
- Introduced DataConfig class to manage file paths for raw and processed trial data. - Updated WidefieldAnalysis to support both raw and processed data configurations. - Implemented motion correction pipeline with methods for applying corrections and saving outputs. - Enhanced data loading methods to accommodate new imaging file formats (TIFF and NPY). - Added metadata extraction and saving functionalities for trial data. - Updated tests to cover new features and configurations, ensuring robust functionality.
…and validation - Changed baseline temperature range from 20-45°C to 16-45°C in the class description and validation constraints.
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