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1. Appendicitis-Prediction Appendicitis-Prediction Public

   An Ensemble Model to Predict Appendicitis: Development and Evaluation

   R

2. crispr_nsc_aging crispr_nsc_aging Public

   Re-analysis of CRISPR–Cas9 NSC aging dataset with pooled quarter-sample comparisons

   Python

3. sn_RNA_analysis sn_RNA_analysis Public

   snRNAseq analysis

   Python

4. slsc_atac_analysis slsc_atac_analysis Public

   Analysis pipeline for ATAC-seq data to study regulatory mechanisms in cancer using open chromatin profiling.

   Shell 1

5. colorectal_biomarker_metagenomics colorectal_biomarker_metagenomics Public

   A minimal stool metagenomics workflow that fetches & subsamples WGS reads, trims and removes human contamination (KneadData), then produces per-sample taxonomic profiles with MetaPhlAn 4.

   Shell

6. spatial-VROmics-analysis spatial-VROmics-analysis Public

   Reproducible spatial transcriptomics workflow using Scanpy on the 10x Genomics Human Lymph Node Visium dataset, inspired by the VR-Omics study.

   Jupyter Notebook