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fix bug in reading IUCN 2022-2 reptile data #191

fix bug in reading IUCN 2022-2 reptile data

fix bug in reading IUCN 2022-2 reptile data #191

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
schedule:
- cron: 0 0 * * 1 # schedule to run at midnight on Monday each week
push:
branches:
- main
- master
pull_request:
branches:
- main
- master
name: Ubuntu
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: ubuntu-20.04, r: 'release'}
- {os: ubuntu-20.04, r: 'devel'}
- {os: ubuntu-20.04, r: 'devel', pkgs: 'depends only'}
env:
_R_REMOTES_NO_ERRORS_FROM_WARNINGS_: true
_R_CHECK_FORCE_SUGGESTS_: false
_R_CHECK_TIMINGS_: 10
_R_CHECK_CRAN_INCOMING_REMOTE_: false
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
CI: true
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
use-public-rspm: true
- name: Install system dependencies
run: |
sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable
sudo apt update
sudo apt-get install \
libgdal-dev libgeos-dev libproj-dev gdal-bin grass \
libgmp3-dev libmpfr-dev libudunits2-dev \
libharfbuzz-dev libfribidi-dev
- uses: r-lib/actions/setup-r-dependencies@v2
with:
cache-version: 4
extra-packages: |
any::covr
any::rcmdcheck
any::remotes
cran/XML
cran/dotCall64
prepr=?ignore
link2GI=?ignore
rgrass=?ignore
smoothr=?ignore
OpenMPController=?ignore
needs: |
check
coverage
- name: Install spatial R packages
run: |
options(repos = "https://cloud.r-project.org/")
install.packages("rgdal")
install.packages("sf")
install.packages("terra")
install.packages("lwgeom")
install.packages("link2GI")
install.packages("rgrass")
install.packages("smoothr")
remotes::install_github("dickoa/prepr")
shell: Rscript {0}
- name: Session information
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
- name: Environmental variables
if: matrix.config.pkgs == 'depends only'
run: |
echo "_R_CHECK_DEPENDS_ONLY_=true" >> $GITHUB_ENV
- uses: r-lib/actions/check-r-package@v2
with:
args: 'c("--no-manual", "--as-cran", "--no-build-vignettes")'
upload-snapshots: true
- name: Show testthat output
if: always()
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Test coverage
if: runner.os == 'Linux' && matrix.config.r == 'release'
run: covr::codecov()
shell: Rscript {0}