add macos runner #1583
Workflow file for this run
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| # This is a basic workflow to help you get started with Actions | |
| name: CI | |
| # Controls when the action will run. | |
| on: [push, pull_request, workflow_dispatch] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| channels: conda-forge, defaults | |
| # use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: test | |
| - name: Install dependencies and test | |
| run: | | |
| conda create --name test python=${{ matrix.python-version }} --yes | |
| conda activate test || true | |
| conda install --yes numpy scipy nose requests | |
| conda install --yes pdbfixer mdtraj openmm | |
| conda install --yes gfortran cxx-compiler | |
| pip install mmtf-python scikit-learn | |
| cd prody/proteins/hpbmodule/ | |
| gfortran -O3 -fPIC -c reg_tet.f | |
| variable=$(python -c 'from distutils.sysconfig import get_python_inc; print(get_python_inc())') | |
| c++ -O3 -g -fPIC -c hpbmodule.cpp -o hpbmodule.o -I/$variable | |
| c++ -shared -Wl,-soname,hpb.so -o hpb.so hpbmodule.o reg_tet.o -lgfortran | |
| cp hpb.so ../ | |
| cd - | |
| pip install . | |
| python setup.py build_ext --inplace --force | |
| conda install --yes pytest | |
| pytest |