refactoring env

env/local

@@ -0,0 +1,5 @@
+SERVER=http://progenetix.test/
+NEXT_PUBLIC_API_PATH=http://progenetix.test/
+NEXT_PUBLIC_PREFETCH_API_PATH=http://progenetix.test/
+NEXT_PUBLIC_USE_PROXY=false
+NEXT_PUBLIC_SITE_URL=http://progenetix.test/

env/staging

@@ -0,0 +1,4 @@
+NEXT_PUBLIC_API_PATH=/
+NEXT_PUBLIC_PREFETCH_API_PATH=https://staging.progenetix.org/
+NEXT_PUBLIC_USE_PROXY=false
+NEXT_PUBLIC_SITE_URL=https://staging.progenetix.org/

package.json

@@ -2,9 +2,9 @@
   "scripts": {
     "dev": "next",
     "build": "npm run lint && npm run test && next build && next export",
-    "update": "env-cmd -f .env.production npm run-script build",
-    "staging": "env-cmd -f .env.staging npm run-script build",
-    "local": "env-cmd -f .env.local npm run-script build",
+    "update": "env-cmd -f env/production npm run-script build",
+    "staging": "env-cmd -f env/staging npm run-script build",
+    "local": "env-cmd -f env/local npm run-script build",
     "start": "next start",
     "export": "next export",
     "test": "jest",

src/components/searchResults/DatasetResultBox.js

@@ -14,6 +14,7 @@ import { ExternalLink } from "../helpersShared/linkHelpers"
 import { svgFetcher } from "../../hooks/fetcher"
 import BiosamplesStatsDataTable from "./BiosamplesStatsDataTable"
 import { WithData } from "../Loader"
+import { refseq2chro } from "../Chromosome"
 
 const HANDOVER_IDS = {
   histoplot: "histoplot",
@@ -380,8 +381,9 @@ function ucscHref(query) {
     ucscstart = query.start
     ucscend = query.start
   }
+  let chro = refseq2chro(query.referenceName)
 
-  return `http://www.genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr${query.referenceName}%3A${ucscstart}%2D${ucscend}`
+  return `http://www.genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr${chro}%3A${ucscstart}%2D${ucscend}`
 }
 
 function PagedLink({ handover }) {