Stop overwriting new refs with old ones when copying them #410

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Run time

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Job	Run time
ready-to-ship	17s
lint	22s
test (pulp)	9m 53s
test (docs)	3m 10s
test (azure)	10m 11s
test (s3)	10m 26s
test (lowerbounds)	9m 30s
deprecations	1s
	43m 50s