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Modify graphviz installation command #1178

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May 15, 2024
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Modify graphviz installation command #1178

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12 changes: 9 additions & 3 deletions README.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -122,12 +122,18 @@ Optionally, if you wish to input graphs in the dot format, then install pydot (o
For better-looking graphs, you can optionally install pygraphviz. To proceed,
first install graphviz and then pygraphviz (on Ubuntu and Ubuntu WSL).

.. note::
Installing pygraphviz can cause problems on some platforms.
One way that works for most Linux distributions is to
first install graphviz and then pygraphviz as shown below.
Otherwise, please consult the documentation of `pygraphviz <https://pygraphviz.github.io/documentation/stable/install.html>`_.

.. code:: shell

sudo apt install graphviz libgraphviz-dev graphviz-dev pkg-config
## from https://github.com/pygraphviz/pygraphviz/issues/71
pip install pygraphviz --install-option="--include-path=/usr/include/graphviz" \
--install-option="--library-path=/usr/lib/graphviz/"
pip install --global-option=build_ext \
--global-option="-I/usr/local/include/graphviz/" \
--global-option="-L/usr/local/lib/graphviz" pygraphviz

Example: Effect identification and estimation
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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5 changes: 3 additions & 2 deletions docs/source/contributing/contributing-code.rst
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Expand Up @@ -36,8 +36,9 @@ The following steps allow you to contribute code to DoWhy.
.. code:: shell

sudo apt install graphviz libgraphviz-dev graphviz-dev pkg-config
pip install pygraphviz --install-option="--include-path=/usr/include/graphviz" \
--install-option="--library-path=/usr/lib/graphviz/"
pip install --global-option=build_ext \
--global-option="-I/usr/local/include/graphviz/" \
--global-option="-L/usr/local/lib/graphviz" pygraphviz

#. (optional) add dowhy as an upstream remote to keep your
fork up-to-date with DoWhy's main branch.
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12 changes: 9 additions & 3 deletions docs/source/getting_started/install.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -37,12 +37,18 @@ Optionally, if you wish to input graphs in the dot format, then install pydot (o
For better-looking graphs, you can optionally install pygraphviz. To proceed,
first install graphviz and then pygraphviz (on Ubuntu and Ubuntu WSL).

.. note::
Installing pygraphviz can cause problems on some platforms.
One way that works for most Linux distributions is to
first install graphviz and then pygraphviz as shown below.
Otherwise, please consult the documentation of `pygraphviz <https://pygraphviz.github.io/documentation/stable/install.html>`_.

.. code:: shell

sudo apt install graphviz libgraphviz-dev graphviz-dev pkg-config
## from https://github.com/pygraphviz/pygraphviz/issues/71
pip install pygraphviz --install-option="--include-path=/usr/include/graphviz" \
--install-option="--library-path=/usr/lib/graphviz/"
pip install --global-option=build_ext \
--global-option="-I/usr/local/include/graphviz/" \
--global-option="-L/usr/local/lib/graphviz" pygraphviz

Installing with Conda
---------------------
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