* chore(deps): update pre-commit hooks

updates:
- [github.com/pre-commit/mirrors-clang-format: v18.1.8 → v19.1.3](pre-commit/mirrors-clang-format@v18.1.8...v19.1.3)
- [github.com/astral-sh/ruff-pre-commit: v0.6.3 → v0.7.2](astral-sh/ruff-pre-commit@v0.6.3...v0.7.2)
- [github.com/pre-commit/mirrors-mypy: v1.11.2 → v1.13.0](pre-commit/mirrors-mypy@v1.11.2...v1.13.0)
- [github.com/pre-commit/pre-commit-hooks: v4.6.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.6.0...v5.0.0)
- [github.com/adamchainz/blacken-docs: 1.18.0 → 1.19.1](adamchainz/blacken-docs@1.18.0...1.19.1)
- [github.com/mgedmin/check-manifest: 0.49 → 0.50](mgedmin/check-manifest@0.49...0.50)
- [github.com/PyCQA/pylint: v3.2.7 → v3.3.1](pylint-dev/pylint@v3.2.7...v3.3.1)
- [github.com/python-jsonschema/check-jsonschema: 0.29.2 → 0.29.4](python-jsonschema/check-jsonschema@0.29.2...0.29.4)

* style: pre-commit fixes

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Looks like some markdown spilled into our restructured text

* Fix data race all_type_info_populate in free-threading mode
Description:
- fixed data race all_type_info_populate in free-threading mode
- added test

For example, we have 2 threads entering `all_type_info`.
Both enter `all_type_info_get_cache`` function and
there is a first one which inserts a tuple (type, empty_vector) to the map
and second is waiting. Inserting thread gets the (iter_to_key, True) and non-inserting thread
after waiting gets (iter_to_key, False).
Inserting thread than will add a weakref and will then call into `all_type_info_populate`.
However, non-inserting thread is not entering `if (ins.second) {` clause and
returns `ins.first->second;`` which is just empty_vector.
Finally, non-inserting thread is failing the check in `allocate_layout`:
```c++
if (n_types == 0) {
    pybind11_fail(
        "instance allocation failed: new instance has no pybind11-registered base types");
}
```

* style: pre-commit fixes

* Addressed PR comments

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>