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activAnalyzer 2.0.0

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@pydemull pydemull released this 01 Feb 11:04
· 130 commits to master since this release
  • Total kcal and PAL are now correctly computed when the user does not analyse the whole day. There was no problem when the entire day was considered. However, when the user wanted to analyse a given period of the day, BMR information used in the calculations of kcal and PAL was still related to the whole day, not the period of the day to analyse. Total kcal and PAL were thus wrong when the period of the day to be analysed was not the entire day. This has been corrected (#28).
  • Updated arguments passed to dplyr::left_join() function following the release of dplyr package v1.1.0.
  • The app now provides intensity distribution metrics.
  • The app now provides activity accumulation metrics for sedentary behaviour and physical activity: alpha coefficient, median bout duration, usual bout duration, Gini index.
  • The addition of new metrics led to a breaking change in the package: the recap_by_day() function now returns a list, not a dataframe.
  • The buttons and tables related to PROactive instruments panels now correctly disappear when the user runs an new analysis that leads to no valid days for the accelerometer.
  • Some variable names in the source code are no longer hard coded to provide more flexibility when analysing personal datasets outside the app. Default variable names remain the same.
  • The app now allows to export all results to .html reports.
  • The package does not export the following function anymore: tbl_agd.
  • Now the Y labels of the graphics showing counts and steps data include the epoch duration for better data vizualisation context.
  • The function create_fig_res_by_day() now allows to visualise all metrics by day (activity volume, step accumulation, intensity distribution).
  • Added functions to get a radar plot showing MX metrics by day of measurement and for the mean or median of the considered days.
  • The app now shows all results (previously several results were shown only in the report).
  • Updated the vignette.

Note about the user's experience: Because the app now provides more tables and graphics, getting the final results will take more time than the previous version (eg, up to 2'30 for a 14-day file using 60-s epochs with the current version).