Add transforming adaptation with normalizing flows #479
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| # This file is autogenerated by maturin v1.8.2 | |
| # To update, run | |
| # | |
| # maturin generate-ci --pytest --platform all --zig github | |
| # | |
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| tags: | |
| - "*" | |
| pull_request: | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| linux: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: | |
| - runner: ubuntu-22.04 | |
| target: x86_64 | |
| - runner: ubuntu-22.04 | |
| target: aarch64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v5 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist --find-interpreter --zig | |
| sccache: ${{ !startsWith(github.ref, 'refs/tags/') }} | |
| manylinux: auto | |
| before-script-linux: | | |
| dnf install -y clang-libs clang || sudo apt install llvm-dev libclang-dev clang | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-linux-${{ matrix.platform.target }} | |
| path: dist | |
| - name: pytest | |
| if: ${{ startsWith(matrix.platform.target, 'x86_64') }} | |
| shell: bash | |
| run: | | |
| set -e | |
| python3 -m venv .venv | |
| source .venv/bin/activate | |
| uv pip install 'nutpie[all]' --find-links dist --force-reinstall | |
| uv pip install pytest | |
| pytest | |
| - name: pytest | |
| if: ${{ !startsWith(matrix.platform.target, 'x86') && matrix.platform.target != 'ppc64' }} | |
| uses: uraimo/run-on-arch-action@v2 | |
| with: | |
| arch: ${{ matrix.platform.target }} | |
| distro: ubuntu22.04 | |
| githubToken: ${{ github.token }} | |
| install: | | |
| apt-get update | |
| apt-get install -y --no-install-recommends python3 python3-pip curl make clang build-essential python3-dev | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| source $HOME/.local/bin/env | |
| run: | | |
| set -e | |
| source $HOME/.local/bin/env | |
| uv pip install --system -U pip pytest | |
| uv pip install --system 'nutpie[all]' --find-links dist --force-reinstall | |
| pytest | |
| # pyarrow doesn't currently seem to work on musllinux | |
| #musllinux: | |
| # runs-on: ${{ matrix.platform.runner }} | |
| # strategy: | |
| # fail-fast: false | |
| # matrix: | |
| # platform: | |
| # - runner: ubuntu-22.04 | |
| # target: x86_64 | |
| # - runner: ubuntu-22.04 | |
| # target: aarch64 | |
| # steps: | |
| # - uses: actions/checkout@v4 | |
| # - uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: "3.12" | |
| # - name: Install uv | |
| # uses: astral-sh/setup-uv@v5 | |
| # - name: Build wheels | |
| # uses: PyO3/maturin-action@v1 | |
| # with: | |
| # target: ${{ matrix.platform.target }} | |
| # args: --release --out dist --find-interpreter | |
| # sccache: ${{ !startsWith(github.ref, 'refs/tags/') }} | |
| # manylinux: musllinux_1_2 | |
| # before-script-linux: | | |
| # dnf install -y clang-libs clang || apt install llvm-dev libclang-dev clang | |
| # - name: Upload wheels | |
| # uses: actions/upload-artifact@v4 | |
| # with: | |
| # name: wheels-musllinux-${{ matrix.platform.target }} | |
| # path: dist | |
| # - name: pytest | |
| # if: ${{ startsWith(matrix.platform.target, 'x86_64') }} | |
| # uses: addnab/docker-run-action@v3 | |
| # with: | |
| # image: alpine:latest | |
| # options: -v ${{ github.workspace }}:/io -w /io | |
| # run: | | |
| # set -e | |
| # apk add py3-pip py3-virtualenv curl make clang | |
| # curl -LsSf https://astral.sh/uv/install.sh | sh | |
| # source $HOME/.local/bin/env | |
| # python3 -m virtualenv .venv | |
| # source .venv/bin/activate | |
| # # No numba packages for alpine | |
| # uv pip install 'nutpie[stan]' --find-links dist --force-reinstall | |
| # uv pip install pytest | |
| # pytest | |
| # - name: pytest | |
| # if: ${{ !startsWith(matrix.platform.target, 'x86') }} | |
| # uses: uraimo/run-on-arch-action@v2 | |
| # with: | |
| # arch: ${{ matrix.platform.target }} | |
| # distro: alpine_latest | |
| # githubToken: ${{ github.token }} | |
| # install: | | |
| # apk add py3-virtualenv curl make clang | |
| # curl -LsSf https://astral.sh/uv/install.sh | sh | |
| # source $HOME/.local/bin/env | |
| # run: | | |
| # set -e | |
| # python3 -m virtualenv .venv | |
| # source $HOME/.local/bin/env | |
| # source .venv/bin/activate | |
| # uv pip install pytest | |
| # # No numba packages for alpine | |
| # uv pip install 'nutpie[stan]' --find-links dist --force-reinstall | |
| # pytest | |
| windows: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| matrix: | |
| platform: | |
| - runner: windows-latest | |
| target: x64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| architecture: ${{ matrix.platform.target }} | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v5 | |
| - name: Install LLVM and Clang | |
| uses: KyleMayes/install-llvm-action@v2 | |
| with: | |
| version: "15.0" | |
| directory: ${{ runner.temp }}/llvm | |
| - name: Set up TBB | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| Add-Content $env:GITHUB_PATH "$(pwd)/stan/lib/stan_math/lib/tbb" | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| env: | |
| LIBCLANG_PATH: ${{ runner.temp }}/llvm/lib | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist --find-interpreter | |
| sccache: ${{ !startsWith(github.ref, 'refs/tags/') }} | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-windows-${{ matrix.platform.target }} | |
| path: dist | |
| - name: pytest | |
| if: ${{ !startsWith(matrix.platform.target, 'aarch64') }} | |
| shell: bash | |
| run: | | |
| set -e | |
| python3 -m venv .venv | |
| source .venv/Scripts/activate | |
| uv pip install "nutpie[all]" --find-links dist --force-reinstall | |
| uv pip install pytest | |
| pytest | |
| macos: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: | |
| - runner: macos-13 | |
| target: x86_64 | |
| - runner: macos-14 | |
| target: aarch64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v5 | |
| - uses: maxim-lobanov/setup-xcode@v1 | |
| with: | |
| xcode-version: latest-stable | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist --find-interpreter | |
| sccache: ${{ !startsWith(github.ref, 'refs/tags/') }} | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-macos-${{ matrix.platform.target }} | |
| path: dist | |
| - name: pytest | |
| run: | | |
| set -e | |
| python3 -m venv .venv | |
| source .venv/bin/activate | |
| uv pip install 'nutpie[all]' --find-links dist --force-reinstall | |
| uv pip install pytest | |
| pytest | |
| sdist: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build sdist | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| command: sdist | |
| args: --out dist | |
| - name: Upload sdist | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-sdist | |
| path: dist | |
| release: | |
| name: Release | |
| runs-on: ubuntu-latest | |
| if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }} | |
| needs: [linux, windows, macos, sdist] | |
| permissions: | |
| # Use to sign the release artifacts | |
| id-token: write | |
| # Used to upload release artifacts | |
| contents: write | |
| # Used to generate artifact attestation | |
| attestations: write | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| - name: Generate artifact attestation | |
| uses: actions/attest-build-provenance@v1 | |
| with: | |
| subject-path: "wheels-*/*" | |
| - name: Publish to PyPI | |
| if: ${{ startsWith(github.ref, 'refs/tags/') }} | |
| uses: PyO3/maturin-action@v1 | |
| env: | |
| MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }} | |
| with: | |
| command: upload | |
| args: --non-interactive --skip-existing wheels-*/* | |
| - name: Upload to GitHub Release | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| files: | | |
| wasm-wheels/*.whl | |
| prerelease: ${{ contains(github.ref, 'alpha') || contains(github.ref, 'beta') }} |