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240 review nncell and nncombinatorial models + Fixed SAN bugs #269

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merged 13 commits into from
Feb 20, 2024

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@gbg141 gbg141 commented Feb 15, 2024

This pull request addresses the following points:

  • Refactorization of cell and combinatorial models, decoupling the readout function from their implementation (analogous to what was already implemented for simplicial and hypergraph architectures, PRs Simplicial checks #250 and Hypergraph checks #249). Models, notebooks and tests have been updated.
  • Solved two bugs in SAN implementation --it was not possible to train it on GPU.

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codecov bot commented Feb 15, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (aa07026) 97.45% compared to head (cb7f074) 97.40%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #269      +/-   ##
==========================================
- Coverage   97.45%   97.40%   -0.05%     
==========================================
  Files          58       58              
  Lines        2120     2084      -36     
==========================================
- Hits         2066     2030      -36     
  Misses         54       54              

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.gitignore Outdated Show resolved Hide resolved
pyproject.toml Outdated
Comment on lines 124 to 128
exclude = [
'\.undocumented_method$',
'\.__repr__$',
'\.__init__$',
]
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Please revert this, __init__ and __repr__ should be documented.

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I have reverted it, but currently __init__ methods are not documented in TopoModelX. This results in failing the tests for any class that you modify.

topomodelx/nn/cell/can.py Show resolved Hide resolved
topomodelx/nn/cell/can.py Outdated Show resolved Hide resolved
topomodelx/nn/cell/cwn.py Outdated Show resolved Hide resolved
topomodelx/nn/combinatorial/hmc.py Outdated Show resolved Hide resolved
topomodelx/nn/combinatorial/hmc.py Outdated Show resolved Hide resolved
@gbg141 gbg141 requested a review from ffl096 February 16, 2024 09:31
@ninamiolane ninamiolane merged commit a158cbf into main Feb 20, 2024
23 of 24 checks passed
@ffl096 ffl096 deleted the 240-review-nncell-and-nncombinatorial-models branch February 20, 2024 15:59
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3 participants