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add citation to ccs method
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lizgehret committed Jan 16, 2025
1 parent a2473bd commit 14b6911
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions q2_dada2/plugin_setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@
_POOL_OPT = {'pseudo', 'independent'}
_CHIM_OPT = {'consensus', 'none'}

citations = qiime2.plugin.Citations.load('citations.bib', package='q2_dada2')
plugin = qiime2.plugin.Plugin(
name='dada2',
version=q2_dada2.__version__,
Expand All @@ -29,8 +30,7 @@
description=('This QIIME 2 plugin wraps DADA2 and supports '
'sequence quality control for single-end and paired-end '
'reads using the DADA2 R library.'),
short_description='Plugin for sequence quality control with DADA2.',
citations=qiime2.plugin.Citations.load('citations.bib', package='q2_dada2')
short_description='Plugin for sequence quality control with DADA2.'
)


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description='This method denoises single-end Pacbio CCS sequences, '
'dereplicates them, and filters chimeras. '
'Tutorial and workflow: '
'https://github.com/benjjneb/LRASManuscript'
'https://github.com/benjjneb/LRASManuscript',
citations=[citations['callahan2019dada2ccs']]
)


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