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2024.02 #3377

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Feb 26, 2024
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2024.02 #3377

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14 changes: 14 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,18 @@
# Qiita changelog

Version 2024.02
---------------

Deployed on February 27th, 2024

* Default workflows now accept commands with multiple inputs.
* The loading time of the main study page was improved [#3350](https://github.com/qiita-spots/qiita/pull/3350).
* SPP improvements - mainly @charles-cowart, thank you! Errors are now show to the user in the GUI [#127](hhttps://github.com/biocore/mg-scripts/pull/127), admins can restart jobs [#129](hhttps://github.com/biocore/mg-scripts/pull/129), adapter-trimmer files now are stored and their sequence counts are part of the prep-info [#126](hhttps://github.com/biocore/mg-scripts/pull/126), and support for per instrument/data-type configuration [#123](hhttps://github.com/biocore/mg-scripts/pull/123).
* The internal Sequence Processing Pipeline is now using the https://www.gencodegenes.org human transcripts v44 for Metatranscriptomic data - additional to the human pan-genome reference, with the GRCh38 genome + PhiX and T2T-CHM13v2.0 genome - for human host filtering.
* Added a command to qp-woltka: 'Calculate RNA Copy Counts'.
* Other fixes - mainly by @sjanssen2, thank you!: [#3345](https://github.com/qiita-spots/qiita/pull/3345),[#3224](https://github.com/qiita-spots/qiita/pull/3224), [#3357](https://github.com/qiita-spots/qiita/pull/3357), [#3358](https://github.com/qiita-spots/qiita/pull/3358), [#3359](https://github.com/qiita-spots/qiita/pull/3359), [#3362](https://github.com/qiita-spots/qiita/pull/3362), [#3364](https://github.com/qiita-spots/qiita/pull/3364).


Version 2023.12
---------------

Expand All @@ -14,6 +27,7 @@ Deployed on January 8th, 2024
* Updated the Adapter and host filtering plugin (qp-fastp-minimap2) to v2023.12 addressing a bug in adapter filtering; [more information](https://qiita.ucsd.edu/static/doc/html/processingdata/qp-fastp-minimap2.html).
* Other fixes: [3334](https://github.com/qiita-spots/qiita/pull/3334), [3338](https://github.com/qiita-spots/qiita/pull/3338). Thank you @sjanssen2.
* The internal Sequence Processing Pipeline is now using the human pan-genome reference, together with the GRCh38 genome + PhiX and T2T-CHM13v2.0 genome for human host filtering.
* Added two new commands to qp-woltka: 'SynDNA Woltka' & 'Calculate Cell Counts'.


Version 2023.10
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2 changes: 1 addition & 1 deletion qiita_core/__init__.py
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Expand Up @@ -6,4 +6,4 @@
# The full license is in the file LICENSE, distributed with this software.
# -----------------------------------------------------------------------------

__version__ = "2023.12"
__version__ = "2024.02"
2 changes: 1 addition & 1 deletion qiita_db/__init__.py
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Expand Up @@ -27,7 +27,7 @@
from . import user
from . import processing_job

__version__ = "2023.12"
__version__ = "2024.02"

__all__ = ["analysis", "artifact", "archive", "base", "commands",
"environment_manager", "exceptions", "investigation", "logger",
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2 changes: 1 addition & 1 deletion qiita_pet/__init__.py
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Expand Up @@ -6,4 +6,4 @@
# The full license is in the file LICENSE, distributed with this software.
# -----------------------------------------------------------------------------

__version__ = "2023.12"
__version__ = "2024.02"
2 changes: 1 addition & 1 deletion qiita_pet/handlers/api_proxy/__init__.py
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Expand Up @@ -38,7 +38,7 @@
from .user import (user_jobs_get_req)
from .util import check_access, check_fp

__version__ = "2023.12"
__version__ = "2024.02"

__all__ = ['prep_template_summary_get_req', 'data_types_get_req',
'study_get_req', 'sample_template_filepaths_get_req',
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2 changes: 1 addition & 1 deletion qiita_ware/__init__.py
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Expand Up @@ -6,4 +6,4 @@
# The full license is in the file LICENSE, distributed with this software.
# -----------------------------------------------------------------------------

__version__ = "2023.12"
__version__ = "2024.02"
2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -10,7 +10,7 @@
from setuptools import setup
from glob import glob

__version__ = "2023.12"
__version__ = "2024.02"


classes = """
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