fixed typo

qiyunzhu · Feb 13, 2024 · 0244a46 · 0244a46
1 parent 3b76f01
commit 0244a46
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/doc/align.md b/doc/align.md
@@ -105,7 +105,7 @@ seqtk mergepe R1.fq R2.fq | seqtk seq -a > input.fa
 Then:
 
 ```bash
-bowtie2 -p 8 -x db -U input.fa --very-sensitive --no-head --no-unal -k 16 --np 1 --mp "1,1" --rdg "0,1" --rfg "0,1" --score-min "L,0,-0.05" | cut -f1-9 | sed 's/$/\t*\t*/' | gzip > output.sam.gz
+bowtie2 -p 8 -x db -f -U input.fa --very-sensitive --no-head --no-unal -k 16 --np 1 --mp "1,1" --rdg "0,1" --rfg "0,1" --score-min "L,0,-0.05" | cut -f1-9 | sed 's/$/\t*\t*/' | gzip > output.sam.gz
 ```
 
 This is equivalent to the SHOGUN command: