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Fix for OGR ignoring complex polygons #10

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Merged
mdales merged 2 commits into from
May 13, 2025
Merged

Fix for OGR ignoring complex polygons #10

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e78cea9
Fix for OGR ignoring complex polygons
mdales May 13, 2025
6162065
CI fix
mdales May 13, 2025
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1 change: 1 addition & 0 deletions .github/workflows/python-package.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,7 @@ jobs:
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install gdal[numpy]==3.10.3
python -m pip install -r requirements.txt
- name: Lint with pylint
run: |
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6 changes: 6 additions & 0 deletions threats/threat_processing.py
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Expand Up @@ -38,9 +38,13 @@ def threat_processing_per_species(
weighted_species = proportional_aoh_per_pixel * category_weight

total_threat_weight = sum(x[1] for x in threat_data)
print(threat_data)
print(total_threat_weight)
for threat_id, weight in threat_data:
print(threat_id, weight)
proportional_threat_weight = weight / total_threat_weight
per_threat_per_species_score = weighted_species * proportional_threat_weight
print(per_threat_per_species_score.sum())

threat_dir_path = os.path.join(output_directory_path, str(threat_id))
os.makedirs(threat_dir_path, exist_ok=True)
Expand All @@ -49,6 +53,8 @@ def threat_processing_per_species(
per_threat_per_species_score.save(result)

def main() -> None:
os.environ["OGR_GEOJSON_MAX_OBJ_SIZE"] = "0"

parser = argparse.ArgumentParser(description="Calculate per species threat layers")
parser.add_argument(
'--speciesdata',
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