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Simon demo #24

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Jan 17, 2024
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10 changes: 7 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -26,13 +26,15 @@ You will also need to accept the Subscription from your email client.

Use your Quilt Catalog to browse the inputs and outputs

1. Go to Console and find the Omics-Quilt stack
1. Go to AWS Console and find the Omics-Quilt stack
2. Copy names of the INPUT and OUTPUT buckets
3. Copy the RegistryRoleARN
3. Copy the Status Topic ARN?!?
4. Go your Quilt Catalog
5. Click "+" on the front page (or Admin Settings -> Buckets)
6. Click "+" in the upper right corner to add a new bucket
7. For each bucket, enter the name and ARN
1. Name: Physical Name from Stack
2. Title: Omics Quilt Input / Output
3. SNS Topic ARN

### Run the Workflow

Expand All @@ -41,6 +43,8 @@ Use your Quilt Catalog to browse the inputs and outputs
3. Create Folders `fastq` and, inside that, `<region>`
4. Upload the JSON file to `s3://<input-bucket>/fastq/<region>/<region>.json`

TODO: Setup a Quilt package push that does this for you

### View the Results

1. Go to the 'packager' Lambda and view the logs
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20 changes: 10 additions & 10 deletions package.json

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