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@qupath

QuPath

Open source software for bioimage analysis
README.md

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  1. qupath qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.3k 319

  2. qupath-docs qupath-docs Public

    QuPath documentation

    Python 20 23

  3. qupath-extension-stardist qupath-extension-stardist Public

    QuPath extension to run StarDist nucleus detection

    Java 47 7

  4. qupath-extension-djl qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 8 7

  5. qupath-extension-omero-web qupath-extension-omero-web Public

    QuPath extension to work with images through OMERO's web API

    Java 10 11

  6. qupath-extension-bioimageio qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    Java 6 4

Repositories

Showing 10 of 50 repositories
  • extension-manager Public

    A manager for catalogs and extensions.

    qupath/extension-manager’s past year of commit activity
    Java 0 Apache-2.0 3 0 0 Updated Dec 10, 2025
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    qupath/qupath’s past year of commit activity
    Java 1,257 GPL-3.0 319 31 5 Updated Dec 10, 2025
  • qubalab Public

    Lab for quantitative bioimage analysis experiments in Python

    qupath/qubalab’s past year of commit activity
    Python 18 Apache-2.0 5 0 0 Updated Dec 4, 2025
  • qupath-extension-wsinfer Public

    QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

    qupath/qupath-extension-wsinfer’s past year of commit activity
    Java 26 Apache-2.0 10 1 1 Updated Dec 3, 2025
  • qupath-imglib2 Public

    A Java library to link QuPath and ImgLib2

    qupath/qupath-imglib2’s past year of commit activity
    Java 1 Apache-2.0 1 1 0 Updated Dec 2, 2025
  • qupath-catalog Public

    The catalog containing QuPath extensions developed by the QuPath team

    qupath/qupath-catalog’s past year of commit activity
    1 Apache-2.0 1 2 0 Updated Dec 1, 2025
  • qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    qupath/qupath-extension-omero’s past year of commit activity
    Java 8 Apache-2.0 2 2 0 Updated Nov 28, 2025
  • qupath-fxtras Public

    Reusable JavaFX tools for QuPath (and beyond)

    qupath/qupath-fxtras’s past year of commit activity
    Java 6 Apache-2.0 4 1 0 Updated Nov 25, 2025
  • qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    qupath/qupath-extension-djl’s past year of commit activity
    Java 8 Apache-2.0 7 1 0 Updated Nov 11, 2025
  • qupath-docs Public

    QuPath documentation

    qupath/qupath-docs’s past year of commit activity
    Python 20 23 8 1 Updated Nov 11, 2025
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