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Makefile.CLEF2020
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Makefile.CLEF2020
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PROCESSES=8
CLEF_SCORER_PATH ?=~/qurator/CLEF-HIPE-2020-scorer
CLEF_PATH ?=/home/kai.labusch/qurator/CLEF-HIPE-2020
#CLEF_TARGET_PATH ?=$(DATA_PATH)/clef2020
CLEF_TARGET_PATH ?=$(DATA_PATH)/clef2020-2
WIKI_DATA_PATH ?=data/wikidata
MAX_DIST ?= 0.05
MAX_CANDIDATES ?= 25
MAX_FREQUENCY ?= 1000
NED_THRESHOLD ?= 0.2
# NOT_AFTER ?=--not-after=1970
NOT_AFTER ?=
NED_PARAMS ?=md$(MAX_DIST)_mc$(MAX_CANDIDATES)_mf$(MAX_FREQUENCY)_nthr$(NED_THRESHOLD)
NED_JSON_PARAMS ?=md$(MAX_DIST)_mc$(MAX_CANDIDATES)_mf$(MAX_FREQUENCY)
FIND_ENTITY_PARAMS ?=--ned-threshold=$(NED_THRESHOLD) --max-candidates=$(MAX_CANDIDATES) --max-dist=$(MAX_DIST) $(NOT_AFTER)
DE_NER_URL ?=http://b-lx0053.sbb.spk-berlin.de/sbb-tools/ner/ner/0
FR_NER_URL ?=http://b-lx0053.sbb.spk-berlin.de/sbb-tools/ner/ner/1
EN_NER_URL ?=http://b-lx0053.sbb.spk-berlin.de/sbb-tools/ner/ner/1
DE_NED_URL ?=http://b-lx0053.sbb.spk-berlin.de/sbb-tools/de-ned
FR_NED_URL ?=http://b-lx0053.sbb.spk-berlin.de/sbb-tools/fr-ned
EN_NED_URL ?=http://b-lx0053.sbb.spk-berlin.de/sbb-tools/en-ned
RUNNUMBER ?=1
# ====================================================
# create result directory ...
$(CLEF_TARGET_PATH):
mkdir -p $(CLEF_TARGET_PATH)
# ====================================================
# convert CLEF data format into our internal tsv format ...
.PRECIOUS: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-dev-%.tsv
$(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-dev-%.tsv:
clef2tsv-2020 $(CLEF_PATH)/data/training-v1.2/$*/HIPE-data-v1.2-dev-$*.tsv $@
.PRECIOUS: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-train-%.tsv
$(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-train-%.tsv:
clef2tsv-2020 $(CLEF_PATH)/data/training-v1.2/$*/HIPE-data-v1.2-train-$*.tsv $@
.PRECIOUS: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-test-masked-%.tsv
$(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-test-masked-%.tsv:
clef2tsv-2020 $(CLEF_PATH)/data/test-masked-v1.2/$*/HIPE-data-v1.2-test-masked-$*.tsv $@
.PRECIOUS: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-masked-bundle5-%.tsv
$(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-masked-bundle5-%.tsv:
clef2tsv-2020 $(CLEF_PATH)/data/test-masked-v1.3/$*/HIPE-data-v1.3-test-masked-bundle5-$*.tsv $@
.PRECIOUS: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-%.tsv
$(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-%.tsv:
clef2tsv-2020 $(CLEF_PATH)/data/test-v1.3/$*/HIPE-data-v1.3-test-$*.tsv $@
CLEF2020-%-tsv: $(CLEF_TARGET_PATH) $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-%.tsv $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-dev-%.tsv $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-train-%.tsv $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-test-masked-%.tsv $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-masked-bundle5-%.tsv ;
CLEF2020-tsv: CLEF2020-de-tsv CLEF2020-fr-tsv CLEF2020-en-tsv
# ==================================================
# Perform NER and NED ...
.PRECIOUS: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-de-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-de-$(NED_JSON_PARAMS).json
$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-de-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-de-$(NED_JSON_PARAMS).json: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-%-de.tsv
find-entities $(FIND_ENTITY_PARAMS) --noproxy $^ $(basename $@).tsv --ned-json-file=$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-$*-de-$(NED_JSON_PARAMS).json --ner-rest-endpoint=$(DE_NER_URL) --ned-rest-endpoint=$(DE_NED_URL)
.PRECIOUS: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-fr-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-fr-$(NED_JSON_PARAMS).json
$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-fr-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-fr-$(NED_JSON_PARAMS).json: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-%-fr.tsv
find-entities $(FIND_ENTITY_PARAMS) --noproxy $^ $(basename $@).tsv --ned-json-file=$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-$*-fr-$(NED_JSON_PARAMS).json --ner-rest-endpoint=$(FR_NER_URL) --ned-rest-endpoint=$(FR_NED_URL)
.PRECIOUS: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-en-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-en-$(NED_JSON_PARAMS).json
$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-en-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-%-en-$(NED_JSON_PARAMS).json: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-%-en.tsv
find-entities $(FIND_ENTITY_PARAMS) --noproxy $^ $(basename $@).tsv --ned-json-file=$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-$*-en-$(NED_JSON_PARAMS).json --ner-rest-endpoint=$(EN_NER_URL) --ned-rest-endpoint=$(EN_NED_URL)
CLEF2020-%-train-dev-json: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-train-%-$(NED_JSON_PARAMS).json $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-dev-%-$(NED_JSON_PARAMS).json ;
CLEF2020-%-test-masked-json: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-test-masked-%-$(NED_JSON_PARAMS).json ;
# ===================================================
# Perform NED but do not perform NER instead use provided NER information.
.PRECIOUS: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-de-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-de-$(NED_JSON_PARAMS).json
$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-de-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-de-$(NED_PARAMS).json: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-masked-bundle5-de.tsv
find-entities $(FIND_ENTITY_PARAMS) --noproxy $^ $(basename $@).tsv --ned-json-file=$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-de-$(NED_JSON_PARAMS).json --ned-rest-endpoint=$(DE_NED_URL)
.PRECIOUS: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-fr-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-fr-$(NED_JSON_PARAMS).json
$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-fr-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-fr-$(NED_PARAMS).json: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-masked-bundle5-fr.tsv
find-entities $(FIND_ENTITY_PARAMS) --noproxy $^ $(basename $@).tsv --ned-json-file=$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-fr-$(NED_JSON_PARAMS).json --ned-rest-endpoint=$(FR_NED_URL)
.PRECIOUS: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-en-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-en-$(NED_JSON_PARAMS).json
$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-en-$(NED_PARAMS).tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-en-$(NED_PARAMS).json: $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.3-test-masked-bundle5-en.tsv
find-entities $(FIND_ENTITY_PARAMS) --noproxy $^ $(basename $@).tsv --ned-json-file=$(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-en-$(NED_JSON_PARAMS).json --ned-rest-endpoint=$(EN_NED_URL)
CLEF2020-%-test-masked-bundle5-json: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-%-$(NED_JSON_PARAMS).json ;
# ==================================================
# Convert tsv results back into CLEF format ...
.PRECIOUS: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-train-%-$(NED_PARAMS).tsv
$(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-train-%-$(NED_PARAMS).tsv: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-train-%-$(NED_PARAMS).tsv
tsv-clef2020 $^ $(CLEF_PATH)/data/training-v1.2/$*/HIPE-data-v1.2-train-$*.tsv $@
.PRECIOUS: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-dev-%-$(NED_PARAMS).tsv
$(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-dev-%-$(NED_PARAMS).tsv: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-dev-%-$(NED_PARAMS).tsv
tsv-clef2020 $^ $(CLEF_PATH)/data/training-v1.2/$*/HIPE-data-v1.2-dev-$*.tsv $@
.PRECIOUS: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-test-masked-%-$(NED_PARAMS).tsv
$(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-test-masked-%-$(NED_PARAMS).tsv: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-test-masked-%-$(NED_PARAMS).tsv
tsv-clef2020 $^ $(CLEF_PATH)/data/test-masked-v1.2/$*/HIPE-data-v1.2-test-masked-$*-$(NED_PARAMS).tsv $@
.PRECIOUS: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.3-test-masked-bundle5-%-$(NED_PARAMS).tsv
$(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.3-test-masked-bundle5-%-$(NED_PARAMS).tsv: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.3-test-masked-bundle5-%-$(NED_PARAMS).tsv
tsv-clef2020 $^ $(CLEF_PATH)/data/test-masked-v1.3/$*/HIPE-data-v1.3-test-masked-bundle5-$*.tsv $@
# ===================================================
CLEF2020-%-train-eval-nel: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-train-%.tsv
python $(CLEF_SCORER_PATH)/clef_evaluation.py --skip-check --pred=$^ --ref=$(CLEF_PATH)/data/training-v1.2/$*/HIPE-data-v1.2-train-$*.tsv --task=nel --n_best=3 -o $(CLEF_TARGET_PATH)
CLEF2020-%-dev-eval-nel: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-dev-%.tsv
python $(CLEF_SCORER_PATH)/clef_evaluation.py --skip-check --n_best=3 -p $^ -r $(CLEF_PATH)/data/training-v1.2/$*/HIPE-data-v1.2-dev-$*.tsv -t nel -o $(CLEF_TARGET_PATH)
CLEF2020-%-test-eval-nel-only: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.3-test-masked-bundle5-%.tsv
python $(CLEF_SCORER_PATH)/clef_evaluation.py --skip-check --pred=$^ --ref=$(CLEF_PATH)/data/test-masked-v1.3/$*/HIPE-data-v1.3-test-masked-bundle5-$*.tsv --task=nel --n_best=3 -o $(CLEF_TARGET_PATH)
#CLEF2020-test-dev-%-eval-nel: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-dev-%.tsv SBB_bundle2_de_$(RUNNUMBER).tsv
# python $(CLEF_SCORER_PATH)/clef_evaluation.py --task=nel --n_best=3 -p SBB_bundle2_de_$(RUNNUMBER).tsv -r $(CLEF_PATH)/data/training-v1.2/de/HIPE-data-v1.2-dev-de.tsv -t nel -o $(CLEF_TARGET_PATH)
#
#CLEF2020-test-fr-eval-nel: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-dev-fr.tsv
# cp $^ SBB_bundle2_fr_$(RUNNUMBER).tsv
# python $(CLEF_SCORER_PATH)/clef_evaluation.py --task=nel --n_best=3 -p SBB_bundle2_fr_$(RUNNUMBER).tsv -r $(CLEF_PATH)/data/training-v1.2/fr/HIPE-data-v1.2-dev-fr.tsv -t nel -o $(CLEF_TARGET_PATH)
#
#CLEF2020-test-en--eval-nel: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-dev-en.tsv
# cp $^ SBB_bundle2_en_$(RUNNUMBER).tsv
# python $(CLEF_SCORER_PATH)/clef_evaluation.py --task=nel --n_best=3 -p SBB_bundle2_en_$(RUNNUMBER).tsv -r $(CLEF_PATH)/data/training-v1.2/en/HIPE-data-v1.2-dev-en.tsv -t nel -o $(CLEF_TARGET_PATH)
#CLEF2020-de-eval: $(CLEF_TARGET_PATH) CLEF2020-de-train-eval-nel CLEF2020-de-dev-eval-nel
#
#CLEF2020-fr-eval: $(CLEF_TARGET_PATH) CLEF2020-fr-train-eval-nel CLEF2020-fr-dev-eval-nel
#
#CLEF2020-en-eval: $(CLEF_TARGET_PATH) CLEF2020-en-dev-eval-nel
#
#CLEF2020-test-eval: CLEF2020-test-de-eval-nel CLEF2020-test-fr-eval-nel CLEF2020-test-en--eval-nel
#
#CLEF2020-train-dev-eval: $(CLEF_TARGET_PATH) CLEF2020-de-train-eval-nel CLEF2020-de-dev-eval-nel CLEF2020-fr-train-eval-nel CLEF2020-fr-dev-eval-nel CLEF2020-en-dev-eval-nel
# =================================
# Change filenames according to conventions and create submission file for bundle2
$(CLEF_TARGET_PATH)/SBB_bundle2_%_$(RUNNUMBER).tsv: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.2-test-masked-%-$(NED_PARAMS).tsv
cp $^ $@
CLEF2020-%-bundle2: $(CLEF_TARGET_PATH) $(CLEF_TARGET_PATH)/SBB_bundle2_%_$(RUNNUMBER).tsv ;
CLEF2020-bundle2: CLEF2020-de-bundle2 CLEF2020-fr-bundle2 CLEF2020-en-bundle2
zip -j SBB_submission_$(RUNNUMBER).zip $^
# =================================
# Change filenames according to conventions and create submission file for bundle5
$(CLEF_TARGET_PATH)/SBB_bundle5_%_$(RUNNUMBER).tsv: $(CLEF_TARGET_PATH)/CLEF-ned-result-HIPE-data-v1.3-test-masked-bundle5-%-$(NED_PARAMS).tsv
cp $^ $@
CLEF2020-%-bundle5: $(CLEF_TARGET_PATH) $(CLEF_TARGET_PATH)/SBB_bundle5_%_$(RUNNUMBER).tsv ;
CLEF2020-bundle5: $(CLEF_TARGET_PATH) $(CLEF_TARGET_PATH)/SBB_bundle5_de_$(RUNNUMBER).tsv $(CLEF_TARGET_PATH)/SBB_bundle5_fr_$(RUNNUMBER).tsv $(CLEF_TARGET_PATH)/SBB_bundle5_en_$(RUNNUMBER).tsv
zip -j SBB_submission_$(RUNNUMBER)-bundle5.zip $^
# ===============================================================================================================================================
# extract training data for decider ...
.PRECIOUS: $(CLEF_TARGET_PATH)/%-decider-train-dataset-$(NED_JSON_PARAMS).pkl
$(CLEF_TARGET_PATH)/%-decider-train-dataset-$(NED_JSON_PARAMS).pkl: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-train-%-$(NED_JSON_PARAMS).json $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-train-%.tsv
sentence-stat-2020 --processes=$(PROCESSES) $(basename $<).tsv $^ $@
.PRECIOUS: $(CLEF_TARGET_PATH)/en-decider-train-dataset-$(NED_JSON_PARAMS).pkl
$(CLEF_TARGET_PATH)/en-decider-train-dataset-$(NED_JSON_PARAMS).pkl: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-dev-en-$(NED_JSON_PARAMS).json $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-dev-en-$(NED_PARAMS).tsv
sentence-stat-2020 --processes=$(PROCESSES) $(basename $<).tsv $^ $@
CLEF2020-%-decider-train-data: $(CLEF_TARGET_PATH) $(CLEF_TARGET_PATH)/%-decider-train-dataset-$(NED_JSON_PARAMS).pkl ;
CLEF2020-decider-train-data: CLEF2020-de-decider-train-data CLEF2020-fr-decider-train-data CLEF2020-fr-decider-train-data
$(CLEF_TARGET_PATH)/de-decider-dev-dataset.pkl: $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-dev-de.tsv $(CLEF_TARGET_PATH)/ned-full-data-HIPE-v1.2-dev-de.json $(CLEF_TARGET_PATH)/neat-HIPE-data-v1.2-dev-de.tsv
sentence-stat-2020 --processes=$(PROCESSES) $^ $@
CLEF2020-decider-dev-data: $(CLEF_TARGET_PATH)/de-decider-dev-dataset.pkl
# =====================================
# train decider ...
.PRECIOUS: $(CLEF_TARGET_PATH)/%-decider-$(NED_JSON_PARAMS).pkl
$(CLEF_TARGET_PATH)/%-decider-$(NED_JSON_PARAMS).pkl: $(CLEF_TARGET_PATH)/%-decider-train-dataset-$(NED_JSON_PARAMS).pkl
train-decider $^ $@
CLEF2020-%-decider: $(CLEF_TARGET_PATH)/%-decider-$(NED_JSON_PARAMS).pkl ;
CLEF2020-decider: CLEF2020-de-decider CLEF2020-fr-decider CLEF2020-en-decider
# =====================================
CLEF2020-compute-%-knb-coverage: $(WIKI_DATA_PATH)/%-wikipedia-ner-entities.pkl
compute-knb-coverage $^ $(CLEF_PATH)/data/test-v1.3/$*/HIPE-data-v1.3-test-$*.tsv
CLEF2020-compute-knb-coverage: CLEF2020-compute-de-knb-coverage CLEF2020-compute-fr-knb-coverage CLEF2020-compute-en-knb-coverage ;
model-archive:
tar --verbose --exclude=loss_ep*.pkl -h -cz -f models.tar.gz data/BERT/NED/en-model data/BERT/NED/de-model data/BERT/NED/fr-model data/wikidata/*wikipedia-ner-entities.pkl data/wikipedia/*-ned.sqlite data/entity_index/*wikipedia-ner-entities-index-n_trees_100-dist_angular-emb_bert* data/entity_index/*wikipedia-ner-entities-mapping-n_trees_100-dist_angular-emb_bert* data/clef2020-decider/*-decider.pkl