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Tracking Ticket for Merging My Changes #3

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I'm currently in the process of cleaning up the code. This has involved principally two things so far:

  1. Changing utility file names
  2. Adding a script for generating CP2K input sections as Python classes using a template
    I'm stuck right now on managing module names due to repeats in the CP2K subsection keywords. I will keep adding to this PR as I make progress.

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