Merge pull request #198 from ranking-agent/correlated

changed correlated to positively_correlated
ranking-agent · Jul 6, 2023 · 1b558d5 · 1b558d5
2 parents c3c4ed0 + 3cf686a
commit 1b558d5
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Showing 3 changed files with 7 additions and 5 deletions.
diff --git a/openapi-config.yaml b/openapi-config.yaml
@@ -11,7 +11,7 @@ servers:
 #  url: http://127.0.0.1:5000
 termsOfService: http://robokop.renci.org:7055/tos?service_long=ARAGORN&provider_long=RENCI
 title: ARAGORN
-version: 2.4.11
+version: 2.4.12
 tags:
 - name: translator
 - name: ARA

diff --git a/src/rules/Notes b/src/rules/Notes
@@ -7,5 +7,7 @@ The current rules have been created through a somewhat complicated process:
    * Remove superclasses of the opposite (if the goal is decreases activity, don't include affects activity b/c it will allow increases activity)
    * Remove symmetrics
    * remove subclass rules
+5. By hand, I went into kara_typed_rules/rules_with_types_cleaned_finalized.json and changed "biolink:correlated_with"
+     to "biolink:positively_correlated_with"
 
 This process is obviously roundabout and we are going to clarify it in the next round of rule minings.
diff --git a/src/rules/kara_typed_rules/rules_with_types_cleaned_finalized.json b/src/rules/kara_typed_rules/rules_with_types_cleaned_finalized.json
@@ -1132,7 +1132,7 @@
             }
         },
         {
-            "Rule": "?f  biolink:correlated_with  ?b  ?a  biolink:treats  ?f   => ?a  biolink:treats  ?b",
+            "Rule": "?f  biolink:positively_correlated_with  ?b  ?a  biolink:treats  ?f   => ?a  biolink:treats  ?b",
             "Head Coverage": "0.028869887",
             "Std Confidence": "0.259046866",
             "PCA Confidence": "0.259046866",
@@ -1170,7 +1170,7 @@
                             "subject": "f",
                             "object": "$target",
                             "predicates": [
-                                "biolink:correlated_with"
+                                "biolink:positively_correlated_with"
                             ]
                         },
                         "edge_1": {
@@ -3117,7 +3117,7 @@
             }
         },
         {
-            "Rule": "?a  biolink:contraindicated_for  ?f  ?f  biolink:correlated_with  ?b  ?f  biolink:has_phenotype  ?b   => ?a  biolink:contraindicated_for  ?b",
+            "Rule": "?a  biolink:contraindicated_for  ?f  ?f  biolink:positively_correlated_with  ?b  ?f  biolink:has_phenotype  ?b   => ?a  biolink:contraindicated_for  ?b",
             "Head Coverage": "0.004829824",
             "Std Confidence": "0.531120332",
             "PCA Confidence": "0.531120332",
@@ -3162,7 +3162,7 @@
                             "subject": "f",
                             "object": "$target",
                             "predicates": [
-                                "biolink:correlated_with"
+                                "biolink:positively_correlated_with"
                             ]
                         },
                         "edge_2": {