nn fix; rulefix

ranking-agent · Jul 14, 2023 · 96e03aa · 96e03aa
1 parent b68ab86
commit 96e03aa
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Showing 4 changed files with 34 additions and 898 deletions.
diff --git a/openapi-config.yaml b/openapi-config.yaml
@@ -11,7 +11,7 @@ servers:
 #  url: http://127.0.0.1:5000
 termsOfService: http://robokop.renci.org:7055/tos?service_long=ARAGORN&provider_long=RENCI
 title: ARAGORN
-version: 2.4.14
+version: 2.4.15
 tags:
 - name: translator
 - name: ARA

diff --git a/src/rules/Notes b/src/rules/Notes
@@ -14,5 +14,20 @@ The current rules have been created through a somewhat complicated process:
     For these I go into hand and edit the rule to be
     ?e  activity_or_abundance_biolink:affects  ?b  ?e  biolink:similar_to  ?a   => ?a  increased_activity_biolink:affects  ?b
     Changing both the "Rule" and the edge in "template" by adding the correct qualifier
+7. Also hand removed several rules:
+x ?a  biolink:interacts_with  ?b  ?a  decreased_activity_or_abundance_biolink:affects  ?b   => ?a  increased_activity_biolink:affects  ?b"
+x ?b  activity_or_abundance_biolink:affects  ?a  ?a  decreased_activity_or_abundance_biolink:affects  ?b   => ?a  increased_activity_biolink:affects  ?b
+x ?b  biolink:affects_response_to  ?a  ?a  decreased_activity_or_abundance_biolink:affects  ?b   => ?a  increased_activity_biolink:affects  ?b
+x ?a  decreased_activity_or_abundance_biolink:affects  ?b  ?a  increased_activity_or_abundance_biolink:affects  ?b   => ?a  decreased_activity_biolink:affects  ?b
+x ?b  activity_or_abundance_biolink:affects  ?a  ?a  increased_activity_or_abundance_biolink:affects  ?b   => ?a  decreased_activity_biolink:affects  ?b"
+x ?b  biolink:increases_response_to  ?a  ?a  increased_activity_biolink:affects  ?b   => ?a  decreased_activity_biolink:affects  ?b
+x ?a  biolink:interacts_with  ?b  ?a  decreased_activity_or_abundance_biolink:affects  ?b   => ?a  increased_activity_or_abundance_biolink:affects  ?b
+x ?b  activity_or_abundance_biolink:affects  ?a  ?a  decreased_activity_or_abundance_biolink:affects  ?b   => ?a  increased_activity_or_abundance_biolink:affects  ?b
+x ?b  biolink:affects_response_to  ?a  ?a  decreased_activity_or_abundance_biolink:affects  ?b   => ?a  increased_activity_or_abundance_biolink:affects  ?b
+x ?a  decreased_molecular_interaction_biolink:affects  ?b  ?a  increased_activity_or_abundance_biolink:affects  ?b   => ?a  decreased_activity_or_abundance_biolink:affects  ?b
+x ?b  activity_or_abundance_biolink:affects  ?a  ?a  increased_activity_or_abundance_biolink:affects  ?b   => ?a  decreased_activity_or_abundance_biolink:affects  ?b
+x ?b  biolink:affects_response_to  ?a  ?a  increased_activity_biolink:affects  ?b   => ?a  decreased_activity_or_abundance_biolink:affects  ?b
+"?b  biolink:increases_response_to  ?a  ?a  increased_activity_or_abundance_biolink:affects  ?b   => ?a  decreased_activity_or_abundance_biolink:affects  ?b
+
 
 This process is obviously roundabout and we are going to clarify it in the next round of rule minings.