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Odds #204

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merged 2 commits into from
Jul 14, 2023
Merged

Odds #204

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96e03aa
nn fix; rulefix
cbizon Jul 14, 2023
40a4bb7
take out debug
cbizon Jul 14, 2023
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2 changes: 1 addition & 1 deletion openapi-config.yaml
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Expand Up @@ -11,7 +11,7 @@ servers:
# url: http://127.0.0.1:5000
termsOfService: http://robokop.renci.org:7055/tos?service_long=ARAGORN&provider_long=RENCI
title: ARAGORN
version: 2.4.14
version: 2.4.15
tags:
- name: translator
- name: ARA
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15 changes: 15 additions & 0 deletions src/rules/Notes
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Expand Up @@ -14,5 +14,20 @@ The current rules have been created through a somewhat complicated process:
For these I go into hand and edit the rule to be
?e activity_or_abundance_biolink:affects ?b ?e biolink:similar_to ?a => ?a increased_activity_biolink:affects ?b
Changing both the "Rule" and the edge in "template" by adding the correct qualifier
7. Also hand removed several rules:
x ?a biolink:interacts_with ?b ?a decreased_activity_or_abundance_biolink:affects ?b => ?a increased_activity_biolink:affects ?b"
x ?b activity_or_abundance_biolink:affects ?a ?a decreased_activity_or_abundance_biolink:affects ?b => ?a increased_activity_biolink:affects ?b
x ?b biolink:affects_response_to ?a ?a decreased_activity_or_abundance_biolink:affects ?b => ?a increased_activity_biolink:affects ?b
x ?a decreased_activity_or_abundance_biolink:affects ?b ?a increased_activity_or_abundance_biolink:affects ?b => ?a decreased_activity_biolink:affects ?b
x ?b activity_or_abundance_biolink:affects ?a ?a increased_activity_or_abundance_biolink:affects ?b => ?a decreased_activity_biolink:affects ?b"
x ?b biolink:increases_response_to ?a ?a increased_activity_biolink:affects ?b => ?a decreased_activity_biolink:affects ?b
x ?a biolink:interacts_with ?b ?a decreased_activity_or_abundance_biolink:affects ?b => ?a increased_activity_or_abundance_biolink:affects ?b
x ?b activity_or_abundance_biolink:affects ?a ?a decreased_activity_or_abundance_biolink:affects ?b => ?a increased_activity_or_abundance_biolink:affects ?b
x ?b biolink:affects_response_to ?a ?a decreased_activity_or_abundance_biolink:affects ?b => ?a increased_activity_or_abundance_biolink:affects ?b
x ?a decreased_molecular_interaction_biolink:affects ?b ?a increased_activity_or_abundance_biolink:affects ?b => ?a decreased_activity_or_abundance_biolink:affects ?b
x ?b activity_or_abundance_biolink:affects ?a ?a increased_activity_or_abundance_biolink:affects ?b => ?a decreased_activity_or_abundance_biolink:affects ?b
x ?b biolink:affects_response_to ?a ?a increased_activity_biolink:affects ?b => ?a decreased_activity_or_abundance_biolink:affects ?b
"?b biolink:increases_response_to ?a ?a increased_activity_or_abundance_biolink:affects ?b => ?a decreased_activity_or_abundance_biolink:affects ?b


This process is obviously roundabout and we are going to clarify it in the next round of rule minings.
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