Released October 5, 2015
Version 0.7 introduces several optional, but highly recommend features. In particular, THetA2 can now do a priori clustering of intervals when information about potential germline SNPs is provided. As a result, THetA2 0.7 is much faster than the previous versions. See MANUAL.txt for full details
- Optional interval clustering a priori to running THetA2. This is highly recommended as it greatly reduces the run-time of the algorithm. NOTE: To run this option a user must provide SNP read count files. See MANUAL.txt.
- The matlab code to use BAF's to select between multiple solutions has been moved into the main python program.
- The default value for maximum normal contamination to consider has changed from 0.5 to 1.0.