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vineetbansal committed Jan 9, 2025
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6 changes: 3 additions & 3 deletions notebooks/paste2_tutorial.html
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Expand Up @@ -756,7 +756,7 @@ <h1>Compute partial pairwise alignment using PASTE2<a class="headerlink" href="#
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
(INFO) (paste.py) (08-Jan-25 23:33:43) GPU is not available, resorting to torch CPU.
(INFO) (paste.py) (09-Jan-25 14:45:42) GPU is not available, resorting to torch CPU.
</pre></div></div>
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Expand All @@ -772,7 +772,7 @@ <h1>Compute partial pairwise alignment using PASTE2<a class="headerlink" href="#
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
(INFO) (paste.py) (08-Jan-25 23:35:34) GPU is not available, resorting to torch CPU.
(INFO) (paste.py) (09-Jan-25 14:47:35) GPU is not available, resorting to torch CPU.
</pre></div></div>
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Expand All @@ -788,7 +788,7 @@ <h1>Compute partial pairwise alignment using PASTE2<a class="headerlink" href="#
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
(INFO) (paste.py) (08-Jan-25 23:37:22) GPU is not available, resorting to torch CPU.
(INFO) (paste.py) (09-Jan-25 14:49:23) GPU is not available, resorting to torch CPU.
</pre></div></div>
</div>
<p>Let’s check the shape of each alignment matrix. For aligning a slice with n1 spots and a slice with n2 spots, the alignment matrix should be of shape (n1 * n2)</p>
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134 changes: 67 additions & 67 deletions notebooks/paste2_tutorial.ipynb
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Expand All @@ -987,18 +987,18 @@
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