DESCRIPTION edits

CITATION.cff

@@ -1,12 +1,12 @@
 cff-version: 1.2.0
 message: "Matthew P Hamilton  (2023). ready4: Implement Transparent, Reusable and Updatable Computational Health
-Economic Models. Version 0.0.0.9127. Zenodo. https://doi.org/10.5281/zenodo.5606250"
+Economic Models. Version 0.0.0.9128. Zenodo. https://doi.org/10.5281/zenodo.5606250"
 authors:
   - family-names: "Hamilton"
     given-names: "Matthew P"
 title: "ready4: Implement Transparent, Reusable and Updatable Computational Health
 Economic Models"
-version: 0.0.0.9127
+version: 0.0.0.9128
 doi: 10.5281/zenodo.5606250
 date-released: 2023-11-11
 url: "https://ready4-dev.github.io/ready4/"

DESCRIPTION

@@ -31,8 +31,6 @@ Collate:
     'C4_Ready4Module.R'
     'C4_Ready4Private.R'
     'C4_Ready4Public.R'
-    'add.R'
-    'bind.R'
     'fn_add.R'
     'fn_bind.R'
     'fn_get.R'
@@ -43,11 +41,9 @@ Collate:
     'fn_transform.R'
     'fn_update.R'
     'fn_write.R'
-    'get.R'
     'grp_generics.R'
     'imp_fns.R'
     'imp_mthds.R'
-    'make.R'
     'mthd_authorSlot.R'
     'mthd_characterizeSlot.R'
     'mthd_depictSlot.R'
@@ -64,13 +60,7 @@ Collate:
     'mthd_renewSlot.R'
     'mthd_shareSlot.R'
     'pkg_ready4.R'
-    'print.R'
     'ready4-package.R'
-    'remove.R'
-    'rowbind.R'
-    'transform.R'
-    'update.R'
-    'write.R'
 Imports: 
     assertthat,
     bib2df,
@@ -79,7 +69,6 @@ Imports:
     fs,
     Hmisc,
     kableExtra,
-    knitr,
     lifecycle,
     magrittr,
     methods,
@@ -95,11 +84,13 @@ Imports:
     stringi,
     stringr,
     testit,
-    testthat,
     tibble,
     tidyRSS,
     tidyselect,
     tools,
     utils,
     zen4R
 VignetteBuilder: knitr
+Suggests: 
+    knitr,
+    testthat

README.md

@@ -11,12 +11,17 @@
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5606250.svg)](https://doi.org/10.5281/zenodo.5606250)
 <!-- badges: end -->
 
-Foundational elements (classes, generics, methods, functions)
-of a prototype software framework for developing modular, open source
-computational health economic models. The foundation provided by
-'ready4' is extended by other R packages.  For detailed documentation
-visit <https://www.ready4-dev.com/>. For a scientific summary read
-<arxiv:2310.14138>.
+A prototype software framework to support ethical
+implementation of health economic models. To help health economists
+adopt a modular and collaborative approach to model development
+'ready4' provides a template model module, a simple programming syntax
+and tools for finding and documenting model modules.  These
+foundational elements of the 'ready4' software framework are extended
+by other R packages. For detailed documentation about how to use
+'ready4' and its extensions visit <https://www.ready4-dev.com/>.  For
+a scientific summary of the rationale for transparent, reusable And
+updatable computational health economic models read
+<arXiv:2310.14138>.
 
 To install a development version of this software, run the following commands in your R console:
 

data-raw/CRAN_PREP.R

@@ -5,41 +5,7 @@
 # install.packages('attachment', repos = 'https://thinkr-open.r-universe.dev')
 # attachment::att_amend_desc()
 #unlink("dev",T)
-citation_chr <- readLines("inst/CITATION")
-citation_chr[3] <- stringr::str_replace(citation_chr[3], "citEntry", "bibentry")
-citation_chr[4] <- stringr::str_replace(citation_chr[4], "entry", "bibtype")
-citation_chr[8] <- stringr::str_replace(citation_chr[8], "2021", "2023")
-citation_chr[12] <- stringr::str_replace(citation_chr[12], "2021", "2023")
-citation_chr  %>%
-  writeLines(con = "inst/CITATION")
-readLines("README.md") %>%
-  stringr::str_replace_all("svg\\)]\\(https://codecov.io","svg\\)]\\(https://app.codecov.io") %>%
-  writeLines(con = "README.md")
-c(readLines("R/imp_fns.R"),
-  " ",
-  "#' NSE equals function",
-  "#'",
-  "#' Import of non standard evaluation equals function for use in dplyr calls.",
-  "#'",
-  "#' @importFrom rlang :=",
-  "#' @name :=",
-  "#' @rdname nseequals",
-  "#' @export",
-  "#' @keywords internal",
-  "NULL",
-  " ",
-  "#' Dot Data function",
-  "#'",
-  "#' Import of .data function for use in dataset manipulation within functions.",
-  "#'",
-  "#' @importFrom rlang .data",
-  "#' @name .data",
-  "#' @rdname dotdata",
-  "#' @export",
-  "#' @keywords internal",
-  "NULL"
-) %>%
-  writeLines("R/imp_fns.R")
+
 # Run tests and examples
 devtools::test()
 devtools::run_examples()

data-raw/DATASET.R

@@ -6,7 +6,7 @@ source("data-raw/FUNCTIONS.R") # Required to manage conflicts
 x <- ready4fun::make_pkg_desc_ls(pkg_title_1L_chr = "Implement Transparent, Reusable And Updatable Computational Health Economic Models" %>% tools::toTitleCase(),
                                                     pkg_desc_1L_chr = "A prototype software framework to support ethical implementation of health economic models. To help health economists adopt a modular and collaborative approach to model development 'ready4' provides a template model module, a simple programming syntax and tools for finding and documenting model modules.
                                                     These foundational elements of the 'ready4' software framework are extended by other R packages. For detailed documentation about how to use 'ready4' and its extensions visit <https://www.ready4-dev.com/>.
-                                                    For a scientific summary of the rationale for transparent, reusable And updatable computational health economic models read <arxiv:2310.14138>.",
+                                                    For a scientific summary of the rationale for transparent, reusable And updatable computational health economic models read <arXiv:2310.14138>.",
                                                     authors_prsn = c(utils::person(
                                                       given = "Matthew",family = "Hamilton", email =
                                                         "matthew.hamilton1@monash.edu",role = c("aut",
@@ -68,6 +68,42 @@ readLines("DESCRIPTION")[-which(readLines("DESCRIPTION") %in% c("    knitr,", "
 devtools::document()
 usethis::use_package("knitr", type = "Suggests") # instead of imports
 usethis::use_package("testthat", type = "Suggests")
+citation_chr <- readLines("inst/CITATION")
+citation_chr[3] <- stringr::str_replace(citation_chr[3], "citEntry", "bibentry")
+citation_chr[4] <- stringr::str_replace(citation_chr[4], "entry", "bibtype")
+citation_chr[8] <- stringr::str_replace(citation_chr[8], "2021", "2023")
+citation_chr[12] <- stringr::str_replace(citation_chr[12], "2021", "2023")
+citation_chr  %>%
+  writeLines(con = "inst/CITATION")
+readLines("README.md") %>%
+  stringr::str_replace_all("svg\\)]\\(https://codecov.io","svg\\)]\\(https://app.codecov.io") %>%
+  writeLines(con = "README.md")
+c(readLines("R/imp_fns.R"),
+  " ",
+  "#' NSE equals function",
+  "#'",
+  "#' Import of non standard evaluation equals function for use in dplyr calls.",
+  "#'",
+  "#' @importFrom rlang :=",
+  "#' @name :=",
+  "#' @rdname nseequals",
+  "#' @export",
+  "#' @keywords internal",
+  "NULL",
+  " ",
+  "#' Dot Data function",
+  "#'",
+  "#' Import of .data function for use in dataset manipulation within functions.",
+  "#'",
+  "#' @importFrom rlang .data",
+  "#' @name .data",
+  "#' @rdname dotdata",
+  "#' @export",
+  "#' @keywords internal",
+  "NULL"
+) %>%
+  writeLines("R/imp_fns.R")
+devtools::document()
 devtools::build_vignettes()
 #
 # ADD DOI OVERRIDE FOR RELEASES