Bump the testing group in /scripts with 8 updates

[dependabot]

Bumps the testing group in /scripts with 8 updates:

Package	From	To
attrs	23.2.0	24.2.0
certifi	2024.7.4	2024.8.30
deepdiff	7.0.1	8.0.1
idna	3.7	3.8
parse-type	0.6.2	0.6.3
pygithub	2.3.0	2.4.0
pyparsing	3.1.2	3.1.4
pyyaml	6.0.1	6.0.2

Updates attrs from 23.2.0 to 24.2.0

Commits

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Updates certifi from 2024.7.4 to 2024.8.30

Commits

• 325c2fd 2024.08.30 (#304)
• d66bf5f Bump actions/upload-artifact from 4.3.5 to 4.3.6 (#302)
• 2150f23 Bump actions/upload-artifact from 4.3.4 to 4.3.5 (#301)
• fc9b771 Bump actions/setup-python from 5.1.0 to 5.1.1 (#300)
• 965b239 Bump actions/download-artifact from 4.1.7 to 4.1.8 (#297)
• c1f50cc Bump actions/upload-artifact from 4.3.3 to 4.3.4 (#296)
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Updates deepdiff from 7.0.1 to 8.0.1

Release notes

Sourced from deepdiff's releases.

8.0.0

With the introduction of threshold_to_diff_deeper, the values returned are different than in previous versions of DeepDiff. You can still get the older values by setting threshold_to_diff_deeper=0. However to signify that enough has changed in this release that the users need to update the parameters passed to DeepDiff, we will be doing a major version update.

• use_enum_value=True makes it so when diffing enum, we use the enum's value. It makes it so comparing an enum to a string or any other value is not reported as a type change.
• threshold_to_diff_deeper=float is a number between 0 and 1. When comparing dictionaries that have a small intersection of keys, we will report the dictionary as a new_value instead of reporting individual keys changed. If you set it to zero, you get the same results as DeepDiff 7.0.1 and earlier, which means this feature is disabled. The new default is 0.33 which means if less that one third of keys between dictionaries intersect, report it as a new object.
• Deprecated ordered-set and switched to orderly-set. The ordered-set package was not being maintained anymore and starting Python 3.6, there were better options for sets that ordered. I forked one of the new implementations, modified it, and published it as orderly-set.
• Added use_log_scale:bool and log_scale_similarity_threshold:float. They can be used to ignore small changes in numbers by comparing their differences in logarithmic space. This is different than ignoring the difference based on significant digits.
• json serialization of reversed lists.
• Fix for iterable moved items when iterable_compare_func is used.
• Pandas and Polars support.

Commits

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Updates idna from 3.7 to 3.8

Release notes

Sourced from idna's releases.

v3.8

What's Changed

• Fix regression where IDNAError exception was not being produced for certain inputs.
• Add support for Python 3.13, drop support for Python 3.5 as it is no longer testable.
• Documentation improvements
• Updates to package testing using Github actions

Thanks to Hugo van Kemenade for contributions to this release.

Full Changelog: kjd/idna@v3.7...v3.8

Changelog

Sourced from idna's changelog.

3.8 (2024-08-23) ++++++++++++++++

• Fix regression where IDNAError exception was not being produced for certain inputs.
• Add support for Python 3.13, drop support for Python 3.5 as it is no longer testable.
• Documentation improvements
• Updates to package testing using Github actions

Thanks to Hugo van Kemenade for contributions to this release.

Commits

• 784c6f4 Release v3.8
• 28c7c9e Typo fix
• a2b41c3 Pin remainder of Github Actions flagged in code scanning
• 1f613c5 More Github Action dependency pinning
• a87e2b6 Update OSSF scorecard to latest version
• 12d4dd1 Merge pull request #182 from kjd/github-pypi-actions
• e1a1541 Pin Github Actions dependencies
• c109d3a Merge branch 'master' into github-pypi-actions
• f8a8de4 Do not try to build/send packages to TestPyPI for now
• 613bdde Update regexp to move global flag to start of expression
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Updates parse-type from 0.6.2 to 0.6.3

Release notes

Sourced from parse-type's releases.

v0.6.3

UPDATE TO: parse v1.20.2

• UPDATE: parse_type/parse.py
• Copy structured test suite to "tests/parse_tests/"
• Copy structured test suite to "tests/parse_tests_with_parse_type"
• REMOVE: tests/test_parse.py

OTHERWISE:

• README: Fix compact display of BADGES (was using multi-line)

DEVELOPMENT:

• CI: Add support for Python 3.12

Changelog

Sourced from parse-type's changelog.

Version History

Version: 0.7.0 (UNRELEASED)

GOALS:

• Drop support for Python 2.7
• Support Python >= 3.7 (probably)

Commits

• 932c1c1 BUMP-VERSION: 0.6.3 (was: 0.6.2)
• c9a549a CI: Add release workflows
• 2195db8 Merge remote-tracking branch 'refs/remotes/origin/main'
• ff21dfb Merge remote-tracking branch 'refs/remotes/origin/main'
• d7c77c2 Merge remote-tracking branch 'refs/remotes/origin/main'
• 0557e54 UPDATE TO: parse v1.20.2
• 399de81 Create SECURITY.md
• 260c464 README: Fix compact display of BADGES (was using multi-line)
• 5c3fcb9 CI: Use "uv" to speed-up Python package installations
• e88424c CI: Try to use "uv" (part 2)
• Additional commits viewable in compare view

Updates pygithub from 2.3.0 to 2.4.0

Release notes

Sourced from pygithub's releases.

v2.4.0

New features

• Allow custom authentication @​kliem (#2987)

Improvements

• Add has_discussions to AuthenticatedUser and Repository classes @​cwlls (#3020)
• Update more SecurityAndAnalysis attributes @​squatched (#3025)
• Implement support for re-running only failed workflow jobs. @​chrisgavin (#2983)
• Add possibility to mark a thread/notification as done @​m42e (#2985)
• Add "pull_request_review_id" to PullRequestComment object @​stroebs (#3000)
• Add minimize and unminimize functions for IssueComment class @​arash77 (#3005)
• Support Organization/Repository custom properties @​jackylamhk (#2968)
• Add dict type to add_attribute script @​jackylamhk (#2977)
• Allow for deleting and restoring branch associated with PR @​austinsasko (#1784)
• Add "archived_at" to Organization object. @​billnapier (#2974)
• Adds Security & Analysis To Repository @​squatched (#2960)
• Add added_by and last_used attributes to RepositoryKey @​ramiro (#2952)
• Add make_latest to GitRelease.update_release @​treee111 (#2888)
• Make Commit.files return PaginatedList @​iarspider (#2939)

Bug Fixes

• Fix GraphQL Queries with Variables @​kgal-pan (#3002)

Maintenance

• Remove support for Python 3.7 @​EnricoMi @​khneal (#3008, #2975)
• docs: add missing code-block @​kumy (#2982)
• Update README.md @​KPCOFGS (#2961)
• CI: Fix test success job @​EnricoMi (#3010)

Changelog

Sourced from pygithub's changelog.

Version 2.4.0 (August 26, 2024)

Breaking Changes ^^^^^^^^^^^^^^^^

• The github.Commit.Commit class provides a files property that used to return a list[github.File.File], which has now been changed to PaginatedList[github.File.File]. This breaks user code that assumes a list:

.. code-block:: python

files = repo.get_commit("7266e812ed2976ea36a4303edecfe5d75522343f").files
no_of_files = len(files)

This will raise a TypeError: object of type 'PaginatedList' has no len(), as the returned PaginatedList does not support the len() method. Use the totalCount property instead:

.. code-block:: python

files = repo.get_commit("7266e812ed2976ea36a4303edecfe5d75522343f").files
no_of_files = files.totalCount

• Removed support for Python 3.7.

New features ^^^^^^^^^^^^

• Allow custom authentication (#2987) (32b826fd)

Improvements ^^^^^^^^^^^^

• Add has_discussions to AuthenticatedUser and Repository classes (#3020) (75224167)
• Update more SecurityAndAnalysis attributes (#3025) (fa168279)
• Implement support for re-running only failed workflow jobs. (#2983) (23e87563)
• Add possibility to mark a thread/notification as done (#2985) (5ba24379)
• Add "pull_request_review_id" to PullRequestComment object (#3000) (6a59cf82)
• Add minimize and unminimize functions for IssueComment class (#3005) (09c4f58e)
• Support Organization/Repository custom properties (#2968) (c5e6b702)
• Add dict type to add_attribute script (#2977) (2a04f9cc)
• Allow for deleting and restoring branch associated with PR (#1784) (4ba1e412)
• Add "archived_at" to Organization object. (#2974) (cc766a6f)
• Adds Security & Analysis To Repository (#2960) (f22af54d)
• Add added_by and last_used attributes to RepositoryKey (#2952) (5dffa64d)
• Add make_latest to GitRelease.update_release (#2888) (60136105)
• Make Commit.files return PaginatedList (#2939) (fa885f00)

Bug Fixes ^^^^^^^^^

... (truncated)

Commits

• 8508735 Release v2.4.0 (#3027)
• 7522416 Add has_discussions to AuthenticatedUser and Repository classes (#3020)
• fa16827 Update more SecurityAndAnalysis attributes (#3025)
• 23e8756 Implement support for re-running only failed workflow jobs. (#2983)
• d0e0507 Complete dropping Python 3.7 (#2975)
• 32b826f Allow custom authentication (#2987)
• 5ba2437 Add possibility to mark a thread/notification as done (#2985)
• 61d37dc CI: Fix test success job (#3010)
• 38197d6 Revert "Add has_discussions field to Repository class" (#3009)
• 7213cd0 Add has_discussions field to Repository class (#2995)
• Additional commits viewable in compare view

Updates pyparsing from 3.1.2 to 3.1.4

Changelog

Sourced from pyparsing's changelog.

Version 3.1.4 - August, 2024

• Fixed a regression introduced in pyparsing 3.1.3, addition of a type annotation that referenced re.Pattern. Since this type was introduced in Python 3.7, using this type definition broke Python 3.6 installs of pyparsing 3.1.3. PR submitted by Felix Fontein, nice work!

Version 3.1.3 - August, 2024

• Added new Tag ParserElement, for inserting metadata into the parsed results. This allows a parser to add metadata or annotations to the parsed tokens. The Tag element also accepts an optional value parameter, defaulting to True. See the new tag_metadata.py example in the examples directory.

  Example:

    # add tag indicating mood
    end_punc = "." | ("!" + Tag("enthusiastic")))
    greeting = "Hello" + Word(alphas) + end_punc
  result = greeting.parse_string("Hello World.")
  print(result.dump())
  result = greeting.parse_string("Hello World!")
  print(result.dump())
  

  prints:

    ['Hello', 'World', '.']
  ['Hello', 'World', '!']
  
  enthusiastic: True
  

Added example mongodb_query_expression.py, to convert human-readable infix query expressions (such as a==100 and b>=200) and transform them into the equivalent query argument for the pymongo package ({'$and': [{'a': 100}, {'b': {'$gte': 200}}]}). Supports many equality and inequality operators - see the docstring for the transform_query function for more examples.

Fixed issue where PEP8 compatibility names for ParserElement static methods were not themselves defined as staticmethods. When called using a ParserElement instance, this resulted in a TypeError exception. Reported by eylenburg (#548).

To address a compatibility issue in RDFLib, added a property setter for the ParserElement.name property, to call ParserElement.set_name.

Modified ParserElement.set_name() to accept a None value, to clear the defined name and corresponding error message for a ParserElement.

... (truncated)

Commits

• b846e4a Prep for 3.1.4 release
• 9bd2356 Add Python 3.6 to CI (#566)
• ee50a19 Add Tag notes to HowToUsePyparsing.rst
• 3ffc3ef Fix typo
• e5e97f7 Add mongodb_query_expression.py to examples; updated 0README.html and test_ex...
• 10cef98 Add Tag ParserElement class
• cf41d90 Prep for 3.1.3 release
• d7c163c Some minor code changes in chemical_formulas.py
• eb56030 Various code cleanups
• a9e7d47 Added name property setter, and enhanced set_name() to accept a None value to...
• Additional commits viewable in compare view

Updates pyyaml from 6.0.1 to 6.0.2

Release notes

Sourced from pyyaml's releases.

6.0.2

What's Changed

• Support for Cython 3.x and Python 3.13.

Full Changelog: yaml/pyyaml@6.0.1...6.0.2

6.0.2rc1

• Support for extension build with Cython 3.x
• Support for Python 3.13
• Added PyPI wheels for musllinux on aarch64

Changelog

Sourced from pyyaml's changelog.

6.0.2 (2024-08-06)

• yaml/pyyaml#808 -- Support for Cython 3.x and Python 3.13

Commits

• 41309b0 Release 6.0.2 (#819)
• dd9f0e1 6.0.2rc1 (#809)
• f5527a2 disable CI trigger on PR edits
• b4d80a7 Python 3.12 + musllinux_1_1_x86_64 wheel support
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