Updated submodules #11
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| name: GitHub Actions CI | |
| on: | |
| push: | |
| branches: [ main, master, develop ] | |
| paths-ignore: | |
| - '**.md' | |
| workflow_dispatch: | |
| jobs: | |
| ######################################################################################## | |
| make: | |
| name: Make | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| machine: [ubuntu-latest, macOS-12] | |
| compiler: [g++-12] | |
| runs-on: ['${{ matrix.machine }}'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: make | |
| run: | | |
| make -j32 CXX=${{matrix.compiler}} | |
| - name: tar artifacts | |
| run: tar -cvf vclust.tar ./vclust.py ./test.py ./example ./bin/kmer-db ./bin/lz-ani ./bin/clusty ./bin/multi-fasta-split | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: executable-artifact-${{ matrix.machine }} | |
| path: ./vclust.tar | |
| ######################################################################################## | |
| pipeline: | |
| name: Pipeline | |
| needs: make | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| machine: [ubuntu-latest, macOS-12] | |
| compiler: [g++-11] | |
| runs-on: ['${{ matrix.machine }}'] | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: executable-artifact-${{ matrix.machine }} | |
| path: ./ | |
| - name: set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: untar artifacts | |
| run: | | |
| tar -xf vclust.tar | |
| - name: run pipeline | |
| run: | | |
| pip install pytest | |
| pytest test.py -k 'not test_cluster_algorithm_leiden' |