v1.3.0: Add the deduplicate command; improve verbosity; add more tests

Update main tests.

v1.2.9: Multiple improvements

• Improved support of patterns shared by large number of samples ('bubbles') at prefilter stage,
• Better progress reporting at align stage,
• Removed --bin* options in vclust.py

v1.2.8: PyPi installation

• PyPi installation,
• Set default --min-kmers to 20.

v1.2.7: Added mode` info` for veryfying availability of submodules binaries.

Added mode `info` for veryfying availability of submodules binaries.

Co-authored-by: aziele <a.zielezinski@gmail.com>

v1.2.6: Improved `align` stage

• Improved time and memory-efficiency of the align step.
• Leiden algorithm included in the pre-compiled macOS binaries.
• Documentation update (Wiki).

v1.2.3: Sampling options added, improved`cluster` stage

• Sampling options added.
• Lower memory requirements of cluster stage.

v1.1.1: Optional output alignments

Updated submodules

v1.0.4: Bugfixes in Clusty and Kmer-db submodules

Version bump.

v1.0.3: Bugfix for large data given as one batch

Fixed:

• For large datasets given as one batch (default), one of vclust components was executed in memory-consuming mode. Now, this is fixed, which should significantly reduce RAM usage.

v1.0.2: Improved error handling

• Improved error handling in main vclust script.