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Update quality-assessment.R
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philouail committed Jan 17, 2024
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8 changes: 4 additions & 4 deletions R/quality-assessment.R
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#' - `percentMissing` and `rowPercentMissing` determine the percentage of
#' missing values in a vector or for each row of a matrix, respectively.
#'
#' - `rowBlank` identifies rows (i.e features) where the mean of test samples
#' is lower than twice the mean of blank samples. This can be used to flag
#' features that results from contamination in the solvent of the samples.
#' Returns a `logical` vector of length equal to the number of rows of `x`.
#' - `rowBlank` identifies rows (i.e., features) where the mean of test samples
#' is lower than a specified multiple (defined by the `threshold` parameter)
#' of the mean of blank samples. This can be used to flag features that result
#' from contamination in the solvent of the samples.
#'
#' These functions are based on standard filtering methods described in the
#' literature, and they are implemented to assist in preprocessing metabolomics
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