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@rivas-lab

Rivas Lab

Source code and tools for projects in the lab

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  1. covid19 covid19 Public

    As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

    Jupyter Notebook 43 7

  2. public-resources public-resources Public

    Repository for resources we'd like to share with the community.

    Jupyter Notebook 24 11

  3. snpnet snpnet Public

    snpnet - Efficient Lasso Solver for Large-scale genetic variant data

    R 18 3

  4. ukbb-tools ukbb-tools Public

    Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data

    Jupyter Notebook 9

  5. mvpmm mvpmm Public

    MultiVariate Polygenic Mixture Model

    R 7 3

  6. Smiles2Dock Smiles2Dock Public

    Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking

    Python 6

Repositories

Showing 10 of 36 repositories
  • mrp Public

    Repo for MRP method.

    rivas-lab/mrp’s past year of commit activity
    Python 2 1 2 2 Updated Jul 24, 2024
  • Smiles2Dock Public

    Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking

    rivas-lab/Smiles2Dock’s past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Jun 9, 2024
  • biomarkers Public
    rivas-lab/biomarkers’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated May 23, 2024
  • AncestryOmicsUKB Public

    Using Pre-training and Interaction Modeling for ancestry-specific disease prediction using multiomics data from the UK Biobank

    rivas-lab/AncestryOmicsUKB’s past year of commit activity
    R 1 MIT 0 0 0 Updated May 19, 2024
  • snpnet Public

    snpnet - Efficient Lasso Solver for Large-scale genetic variant data

    rivas-lab/snpnet’s past year of commit activity
    R 18 3 3 0 Updated Mar 5, 2024
  • FasTag Public

    FasTag: automatic text classification of unstructured medical narratives

    rivas-lab/FasTag’s past year of commit activity
    Jupyter Notebook 5 2 0 2 Updated Mar 24, 2023
  • GlobalBiobankEngine Public

    A resource for the visualization and exploration of genetic and phenotypic data from biobanks

    rivas-lab/GlobalBiobankEngine’s past year of commit activity
    HTML 4 MIT 2 13 11 Updated Dec 8, 2022
  • ukbb-tools Public

    Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data

    rivas-lab/ukbb-tools’s past year of commit activity
    Jupyter Notebook 9 0 7 0 Updated Aug 5, 2022
  • PRS Public
    rivas-lab/PRS’s past year of commit activity
    Jupyter Notebook 0 0 6 0 Updated Jun 27, 2022
  • public-resources Public

    Repository for resources we'd like to share with the community.

    rivas-lab/public-resources’s past year of commit activity
    Jupyter Notebook 24 MIT 11 5 0 Updated Apr 1, 2022
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