Update pytest_workflows.yml #251
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| name: DryRun | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@v2 | |
| - name: Install Nextflow | |
| run: | | |
| wget -qO- get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| - name: Test help | |
| run: nextflow run CoVpipe2.nf --help | |
| - name: dry run | |
| run: | | |
| touch reads_1.fastq reads_2.fastq | |
| nextflow run CoVpipe2.nf --fastq reads_{1,2}.fastq --reference sars-cov-2 --cores 2 --max_cores 2 -stub -profile stub |