Skip to content

Commit

Permalink
updated nextclade output
Browse files Browse the repository at this point in the history
  • Loading branch information
MarieLataretu committed Mar 13, 2024
1 parent 2e0b95c commit 063dc74
Showing 1 changed file with 6 additions and 6 deletions.
12 changes: 6 additions & 6 deletions tests/test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -100,14 +100,14 @@
- path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE.aligned.fasta"
md5sum: 59ee3f944dcda28f16c20f00a819aa0e
- path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE_clade.tsv"
md5sum: 6cdd6ae28611b295d06594993f8ab3bc
md5sum: 92f74146db907b4c8086ccbb550953c8
- path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE_lineage_report.csv"
contains:
- "taxon,lineage,conflict,ambiguity_score,scorpio_call,scorpio_support,scorpio_conflict,scorpio_notes,version,pangolin_version,scorpio_version,constellation_version,is_designated,qc_status,qc_notes,note"
- path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE.aligned.fasta"
md5sum: e1936924ec8fe26dbc87a2277e4a3dac
- path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE_clade.tsv"
md5sum: ac2e403922170a07a41a48947b768a12
md5sum: aa9ff26b8308444690ce986dfe7bed59
- path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE_lineage_report.csv"
contains:
- "taxon,lineage,conflict,ambiguity_score,scorpio_call,scorpio_support,scorpio_conflict,scorpio_notes,version,pangolin_version,scorpio_version,constellation_version,is_designated,qc_status,qc_notes,note"
Expand All @@ -127,7 +127,7 @@
md5sum: b649f9400fe6842b2f8a2537e137f66a
- path: "results/Report/report_datatable.xlsx"
- path: "results/Report/single_tables/nextclade_results.tsv"
md5sum: 58b42101676f5fab5d82c94b8dd91671
md5sum: 7823b5b56e31a5412263384f10d7f204
- path: "results/Report/single_tables/pangolin_results.csv"
md5sum: fcf7e3bc0b3c852a08a8ba801c406920
- path: "results/Report/single_tables/president_results.tsv"
Expand Down Expand Up @@ -236,14 +236,14 @@
- path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE.aligned.fasta"
md5sum: 59ee3f944dcda28f16c20f00a819aa0e
- path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE_clade.tsv"
md5sum: a4ac4a5a69067232f1d9919a45f9ecab
md5sum: 92f74146db907b4c8086ccbb550953c8
- path: "results/05-Linages_Mutations/SAMPLE1_PE/SAMPLE1_PE_lineage_report.csv"
contains:
- "taxon,lineage,conflict,ambiguity_score,scorpio_call,scorpio_support,scorpio_conflict,scorpio_notes,version,pangolin_version,scorpio_version,constellation_version,is_designated,qc_status,qc_notes,note"
- path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE.aligned.fasta"
md5sum: e1936924ec8fe26dbc87a2277e4a3dac
- path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE_clade.tsv"
md5sum: a8bd3d4e09ae750f07ae6cd5d8a83def
md5sum: aa9ff26b8308444690ce986dfe7bed59
- path: "results/05-Linages_Mutations/SAMPLE2_PE/SAMPLE2_PE_lineage_report.csv"
contains:
- "taxon,lineage,conflict,ambiguity_score,scorpio_call,scorpio_support,scorpio_conflict,scorpio_notes,version,pangolin_version,scorpio_version,constellation_version,is_designated,qc_status,qc_notes,note"
Expand All @@ -263,7 +263,7 @@
md5sum: b649f9400fe6842b2f8a2537e137f66a
- path: "results/Report/report_datatable.xlsx"
- path: "results/Report/single_tables/nextclade_results.tsv"
md5sum: dc7a07bc062837349d151c8946ae29c2
md5sum: 7823b5b56e31a5412263384f10d7f204
- path: "results/Report/single_tables/pangolin_results.csv"
- path: "results/Report/single_tables/president_results.tsv"
- path: "results/Report/single_tables/sc2rf_results.csv"
Expand Down

0 comments on commit 063dc74

Please sign in to comment.