add pacbio specific minimap2 parameter and input option #68
Annotations
3 warnings
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Set up miniconda
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
Set up miniconda
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
|
Set up job
4s
4s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Check out pipeline code
4s
4s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Run actions/cache@v4
0s
0s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Install Nextflow
12s
12s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Install nf-test
2s
2s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Set up Singularity
0s
0s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Set up miniconda
32s
32s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Run nf-test
1m 45s
1m 45s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Run pcolby/tap-summary@v1
0s
0s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Post Set up miniconda
1s
1s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Post Install Nextflow
0s
0s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Post Run actions/cache@v4
0s
0s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Post Check out pipeline code
0s
0s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Complete job
0s
0s
Error:
This step has been truncated due to its large size. Download the full logs from the menu
once the workflow run has completed.
Loading