update shiny-apps-deploy.yaml - instll devtools system requirements

rmgpanw · Apr 19, 2024 · 5eb3ad2 · 5eb3ad2
1 parent f5452be
commit 5eb3ad2
Showing 1 changed file with 6 additions and 1 deletion.
diff --git a/.github/workflows/shinyapps-deploy.yaml b/.github/workflows/shinyapps-deploy.yaml
@@ -26,7 +26,12 @@ jobs:
           rm -r renv
           rm .Rprofile
       - name: install gtexr
-        run: devtools::install_github("rmgpanw/gtexr@dev_shiny")
+        run: |
+          Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04", package = "devtools"))' | \
+            while read -r cmd; do \
+            echo $cmd && eval sudo $cmd; \
+            done
+          devtools::install_github("rmgpanw/gtexr@dev_shiny")
         shell: Rscript {0}
       - name: deploy
         uses: BDSI-Utwente/shinyapps-deploy-github-action@v1