methods2models

What does this software do?

This software gives you the (best) protein combination that allows you to analyze cell processes in different phases of the cell cycle.

Required dependencies

• http://www.intiquan.com/iqm-tools/
• https://www.c2b2.columbia.edu/danapeerlab/html/wanderlust.html
• http://sbml.org/Software/libSBML

Installation

0. Did you read the README?
1. Save this directory in your MATLAB path
2. $run M2M_check
3. $run m2m

Files

Input files

• cellcyclemodel.txt (For more help vist: http://www.intiquan.com)

Output files

• pyyyymmddThhmmss.txt (Your parameters which were used for this simulation)
• ryyyymmddThhmmss.txt (Your results)
• wyyyymmddThhmmss.mat (Your workspace)

Example

$ m2m(0:1000,1000,2,0.01,'model_toettcher2008MEX',0);

License

Note: You can run this script in headless mode.