include citation

in readme, and in on-screen output
roblanf · Jul 24, 2018 · 8cd217a · 8cd217a
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diff --git a/MinIONQC.R b/MinIONQC.R
@@ -739,6 +739,9 @@ if(file_test("-f", input.file)==TRUE & length(test.file)>1){
         combined.flowcell(dm, combined.output, q)
         multi.plots(dm, combined.output)
         flog.info('**** Analysis complete ****')
+        flog.info('If you use MinIONQC in your published work, please cite:')
+        flog.info('R Lanfear, M Schalamun, D Kainer, W Wang, B Schwessinger (2018). MinIONQC: fast and simple quality control for MinION sequencing data, Bioinformatics, bty654')
+        flog.info('https://doi.org/10.1093/bioinformatics/bty654')
     }
 
 }else{

diff --git a/README.md b/README.md
@@ -9,6 +9,12 @@
   - [Analysing a single flowcell](https://github.com/roblanf/minion_qc#analysing-a-single-flowcell)
   - [Analysing multiple flowcells](https://github.com/roblanf/minion_qc#analysing-multiple-flowcells)
 
+## Citation
+
+If you use MinIONQC in your published work, please cite  
+
+R Lanfear, M Schalamun, D Kainer, W Wang, B Schwessinger (2018). MinIONQC: fast and simple quality control for MinION sequencing data, Bioinformatics, bty654
+https://doi.org/10.1093/bioinformatics/bty654
 
 ## What and Why?