MinionQC.R version 1.4.2

This release includes the following changes:

1. Support for different plot formats via the new option -f. png is recommended, but others may be useful for various reasons, e.g. if you don't have X11 (required for png)

2. Gracefully handles sequencing summary files with missing data in the input rows. In this case the rows are ignored and the program warns the user which rows were ignored.

MinionQC.R version 1.4.1

Adds a new option thanks to @charles-plessy:

-c COMBINED-ONLY, --combined-only=COMBINED-ONLY
		TRUE or FALSE (the default). When true, MinIONQC will only produce the combined report, it will not produce individual reports for each flowcell.

should be useful if you don't care about individual flowcell reports, or already have them.

MinionQC.R version 1.4.0

This release includes the following changes:

1. Support for PromethION flowcells (auto detects flowcell type)

2. Change of relevant axes to gigabases

3. Addition of a new plot to visualise output per channel on a map of the flowcell

MinionQC.R version 1.3.5

Adds citation data now there's a paper in Bioinformatics

MinionQC.R version 1.3.4

add an install script for bioconda

the minimal download for bioconda is contained in the minionqc.zip file

MinionQC.R version 1.3.3

fixes a number of small bugs in plot legends
clarifies the MIT license for the code
suppress messages from packages
update readme

MinionQC.R version 1.3.2

Fix small issues in readme (including helpful pull request from @baraaorabi)

Fixes a bug in the testing, which caused full runs to fail

Add a new test to make sure that testing bug doesn't reoccur

Fix issue when input summary files are deeply nested, and add appropriate tests

MinionQC.R version 1.3.1

added --smallfigures option, to produce smaller figures e.g. for publication

remove control sequence for direct RNA input

fix all tests

MinionQC.R version 1.3.0

Plots now use a standardised colour scheme (green for good reads, blue for bad) and layout (for multi-flowcell plots, all reads on top, good reads below).

The readme is much improved.

The default output directory is now the same as the input directory (or parent dir of the input file)

A new plot of cumulative yield over time is included

MinionQC.R version 1.2.1

• bug fix in colouring the length_vs_q plot
• uses readr to massively speed up reading in the data (note there is now a new dependency too)