Remove GO as purl.obolib links are often problematic

rsgoncalves · Oct 1, 2024 · 4ee8a01 · 4ee8a01
1 parent ac2173e
commit 4ee8a01
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/test/simple_tests.py b/test/simple_tests.py
@@ -46,9 +46,11 @@ def test_caching_ontology_from_acronym(self):
         assert clo_cache.cache_exists() is True
 
     def test_caching_ontology_set(self):
-        nr_ontologies_in_registry = 8
+        ontology_registry_filepath = os.path.join("..", "text2term", "resources", "ontologies.csv")
+        nr_ontologies_in_registry = len(pd.read_csv(ontology_registry_filepath))
+
         # Test caching the set of ontologies specified in resources/ontologies.csv
-        caches = text2term.cache_ontology_set(os.path.join("..", "text2term", "resources", "ontologies.csv"))
+        caches = text2term.cache_ontology_set(ontology_registry_filepath)
         assert len(caches) == nr_ontologies_in_registry
 
     def test_mapping_to_cached_ontology(self):

diff --git a/text2term/resources/ontologies.csv b/text2term/resources/ontologies.csv
@@ -2,7 +2,6 @@ acronym,version,url
 CL,2023-09-21,https://github.com/obophenotype/cell-ontology/releases/download/v2023-09-21/cl.owl
 EFO,3.57.0,https://github.com/EBISPOT/efo/releases/download/v3.57.0/efo.owl
 FOODON,0.6.0,https://github.com/FoodOntology/foodon/raw/v0.6.0/foodon.owl
-GO,2023-07-27,http://purl.obolibrary.org/obo/go/releases/2023-07-27/go.owl
 HPO,2023-09-01,https://github.com/obophenotype/human-phenotype-ontology/releases/download/v2023-09-01/hp.owl
 MONDO,2023-09-12,https://github.com/monarch-initiative/mondo/releases/download/v2023-08-02/mondo.owl
 NCIT,2022-08-19,https://github.com/NCI-Thesaurus/thesaurus-obo-edition/releases/download/v2022-08-19/ncit.owl