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ruilulab · Aug 18, 2020 · 3234b3a · 3234b3a
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diff --git a/atac.smk → atac-macs2.smk b/atac.smk → atac-macs2.smk
diff --git a/blacklist.rm.sh b/blacklist.rm.sh
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+
+
+ls macs2/*broadPeak | while read id;
+do
+    sort -k1,1 -k2,2n ${id} | \
+    bedtools subtract -a stdin \
+                      -b /home/fangzq/genome/mouse/mm10-blacklist.v2.bed \
+                      -A > beds/${id##*/}
+done
diff --git a/citeseq.smk → citeseq-cellranger.smk b/citeseq.smk → citeseq-cellranger.smk