update logo

README.md

@@ -1,15 +1,13 @@
-![alt text](https://github.com/saeyslab/harpy/blob/main/docs/_static/img/logo-white.png)
-
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-# **Harpy: A library for single-cell Spatial Proteomics data analysis.**
+# **Harpy: single-cell spatial proteomics analysis that makes you happy** <img src="./docs/_static/img/logo.png" align ="right" alt="" width ="150"/>
 
 [![documentation badge](https://readthedocs.org/projects/harpy/badge/?version=latest)](https://harpy.readthedocs.io/en/latest/)
 

docs/conf.py

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 # html_theme = "sphinx_rtd_theme"
 html_static_path = ["_static"]
 html_title = project_name
-html_logo = "_static/img/logo-white.png"
+html_logo = "_static/img/logo.png"
 
 html_theme_options = {
     "repository_url": "https://github.com/saeyslab/harpy",

docs/index.md

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-```{eval-rst}
-.. image:: _static/img/logo-white.png
-  :class: dark-light p-2
-  :alt: Dambi banner
-```
-
-<br><br>
-
-# A library for single-cell Spatial Proteomics data analysis.
+# Harpy: single-cell spatial proteomics analysis that makes you happy
 
-Harpy is a library for single-cell Spatial Proteomics data analysis.
+Harpy is a library for highly-multiplexed microscopy image analysis with single-cell resolution.
 
-Please see our preprint ... for citation and to learn more.
+Please read our documentation to learn more.
 
 ```{eval-rst}
 .. note::
@@ -58,6 +50,12 @@ Please see our preprint ... for citation and to learn more.
 
 ```
 
+The Harpy Python package described here builds on the spatial transcriptomics analysis tool [SPArrOW](https://github.com/saeyslab/napari-sparrow) and keeps the package name for compatibility.
+
+For spatial proteomics analysis, cite [the Harpy GitHub repository](https://github.com/saeyslab/harpy).
+
+For spatial transcriptomics analysis, see the [SPArrOW preprint](https://www.biorxiv.org/content/10.1101/2024.07.04.601829v1) for citation and to learn more.
+
 ```{toctree}
 :hidden: true
 :maxdepth: 2