use nice tqdm

saezlab · Jul 12, 2024 · 31d9925 · 31d9925
1 parent 0d0546f
commit 31d9925
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Showing 11 changed files with 12 additions and 12 deletions.
diff --git a/decoupler/method_aucell.py b/decoupler/method_aucell.py
@@ -8,7 +8,7 @@
 from scipy.sparse import csr_matrix
 
 from numpy.random import default_rng
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 from .pre import extract, rename_net, filt_min_n, return_data
 

diff --git a/decoupler/method_gsea.py b/decoupler/method_gsea.py
@@ -12,7 +12,7 @@
 from .pre import extract, rename_net, filt_min_n, return_data
 from .utils import p_adjust_fdr
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

diff --git a/decoupler/method_gsva.py b/decoupler/method_gsva.py
@@ -13,7 +13,7 @@
 from .pre import extract, rename_net, filt_min_n, return_data
 from .method_gsea import std
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

diff --git a/decoupler/method_mdt.py b/decoupler/method_mdt.py
@@ -9,7 +9,7 @@
 
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 
 def check_if_skranger():

diff --git a/decoupler/method_mlm.py b/decoupler/method_mlm.py
@@ -11,7 +11,7 @@
 
 from scipy import stats
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

diff --git a/decoupler/method_ora.py b/decoupler/method_ora.py
@@ -15,7 +15,7 @@
 from .pre import extract, rename_net, filt_min_n, return_data
 from .utils import p_adjust_fdr
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

diff --git a/decoupler/method_udt.py b/decoupler/method_udt.py
@@ -9,8 +9,7 @@
 
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 
-from tqdm import tqdm
-
+from tqdm.auto import tqdm
 
 def check_if_sklearn():
     try:

diff --git a/decoupler/method_ulm.py b/decoupler/method_ulm.py
@@ -11,7 +11,7 @@
 
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 
 def mat_cov(A, b):

diff --git a/decoupler/method_viper.py b/decoupler/method_viper.py
@@ -12,7 +12,8 @@
 
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
+
 
 import numba as nb
 

diff --git a/decoupler/method_wmean.py b/decoupler/method_wmean.py
@@ -10,7 +10,7 @@
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 from .method_gsea import std
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb
 

diff --git a/decoupler/method_wsum.py b/decoupler/method_wsum.py
@@ -10,7 +10,7 @@
 from .pre import extract, match, rename_net, get_net_mat, filt_min_n, return_data
 from .method_gsea import std
 
-from tqdm import tqdm
+from tqdm.auto import tqdm
 
 import numba as nb