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__pycache__
__pycache__
 
 
scripts
scripts
 
 
utils
utils
 
 
.gitignore
.gitignore
 
 
README.md
README.md
 
 
_config.yml
_config.yml
 
 
_toc.yml
_toc.yml
 
 
chapter_00_intro.md
chapter_00_intro.md
 
 
chapter_01_load_data.ipynb
chapter_01_load_data.ipynb
 
 
chapter_02_raw_reads_and_downsampling.ipynb
chapter_02_raw_reads_and_downsampling.ipynb
 
 
chapter_03_cell_ranger_filtered_basic_analysis.ipynb
chapter_03_cell_ranger_filtered_basic_analysis.ipynb
 
 
chapter_04_cell_ranger_filtered_umap_doublet_analysis.ipynb
chapter_04_cell_ranger_filtered_umap_doublet_analysis.ipynb
 
 
chapter_05_cell_ranger_filtered_cell_typing.ipynb
chapter_05_cell_ranger_filtered_cell_typing.ipynb
 
 
chapter_06_downsampled_basic_analysis.ipynb
chapter_06_downsampled_basic_analysis.ipynb
 
 
chapter_07_downsampled_umap_doublet_analysis.ipynb
chapter_07_downsampled_umap_doublet_analysis.ipynb
 
 
chapter_08_downsampled_cell_typing.ipynb
chapter_08_downsampled_cell_typing.ipynb
 
 
chapter_09_compare_cellbender_to_cellranger.ipynb
chapter_09_compare_cellbender_to_cellranger.ipynb
 
 
chapter_10_cellbender_basic_analysis.ipynb
chapter_10_cellbender_basic_analysis.ipynb
 
 
chapter_11_cellbender_umap_doublet_analysis.ipynb
chapter_11_cellbender_umap_doublet_analysis.ipynb
 
 
chapter_12_cellbender_cell_typing.ipynb
chapter_12_cellbender_cell_typing.ipynb
 
 
chapter_13_cellbender_downsampling_gained_gene_analysis.ipynb
chapter_13_cellbender_downsampling_gained_gene_analysis.ipynb
 
 
chapter_14_plateau_analysis.ipynb
chapter_14_plateau_analysis.ipynb
 
 
chapter_15_conclusion.md
chapter_15_conclusion.md
 
 
logo.png
logo.png
 
 
markdown-notebooks.md
markdown-notebooks.md
 
 
markdown.md
markdown.md
 
 
notebooks.ipynb
notebooks.ipynb
 
 
references.bib
references.bib
 
 
requirements.txt
requirements.txt
 
 

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sail-benchmarking-template

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Template for benchmarking at SAIL

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