Merge pull request #1473 from samply/release/v0.24.0

Release v0.24.0

.clj-kondo/root/config.edn

@@ -69,6 +69,10 @@
     blaze.elm.compiler.external-data ed
     blaze.elm.expression expr
     blaze.executors ex
+    blaze.fhir.spec.references fsr
+    blaze.fhir.structure-definition-repo sdr
+    blaze.middleware.fhir.db db
+    blaze.rest-api.header header
     blaze.scheduler sched
     blaze.test-util tu
     blaze.util u

.github/scripts/check-capability-statement-caching.sh

@@ -0,0 +1,10 @@
+#!/bin/bash -e
+
+SCRIPT_DIR="$(dirname "$(readlink -f "$0")")"
+. "$SCRIPT_DIR/util.sh"
+
+BASE="http://localhost:8080/fhir"
+ETAG=$(curl -sH 'Accept: application/fhir+json' -D - -o /dev/null "$BASE/metadata" | grep -i etag | cut -d: -f2)
+STATUS="$(echo "If-None-Match:$ETAG" | curl -sH 'Accept: application/fhir+json' -H @- -o /dev/null -w "%{http_code}" "$BASE/metadata")"
+
+test "status code" "$STATUS" "304"

.github/scripts/check-resource-totals.sh

@@ -0,0 +1,36 @@
+#!/bin/bash -e
+
+SCRIPT_DIR="$(dirname "$(readlink -f "$0")")"
+. "$SCRIPT_DIR/util.sh"
+
+BASE="http://localhost:8080/fhir"
+ACTUAL_TOTALS="$(curl -sH 'Accept: application/fhir+json' "$BASE/\$totals" | jq -r '.parameter[] | [.name, .valueUnsignedInt] | @csv')"
+EXPECTED_TOTALS="$(cat <<END
+"AllergyIntolerance",76
+"CarePlan",540
+"CareTeam",540
+"Claim",9856
+"Condition",1597
+"Device",28
+"DiagnosticReport",8229
+"DocumentReference",4769
+"Encounter",4769
+"ExplanationOfBenefit",4769
+"ImagingStudy",145
+"Immunization",1616
+"Location",194
+"Medication",326
+"MedicationAdministration",326
+"MedicationRequest",5087
+"Observation",42929
+"Organization",194
+"Patient",120
+"Practitioner",195
+"PractitionerRole",195
+"Procedure",3608
+"Provenance",120
+"SupplyDelivery",1886
+END
+)"
+
+test "resource totals" "$ACTUAL_TOTALS" "$EXPECTED_TOTALS"

.github/scripts/check-total-number-of-resources.sh

@@ -3,4 +3,5 @@
 SCRIPT_DIR="$(dirname "$(readlink -f "$0")")"
 . "$SCRIPT_DIR/util.sh"
 
-test "total number of resources" "$(curl -sH 'Accept: application/fhir+json' http://localhost:8080/fhir | jq -r .total)" "$1"
+BASE="http://localhost:8080/fhir"
+test "total number of resources" "$(curl -sH 'Accept: application/fhir+json' "$BASE" | jq -r .total)" "$1"

.github/scripts/search-observation-profile-version.sh

@@ -0,0 +1,39 @@
+#!/bin/bash -e
+
+SCRIPT_DIR="$(dirname "$(readlink -f "$0")")"
+. "$SCRIPT_DIR/util.sh"
+
+BASE="http://localhost:8080/fhir"
+PROFILE_URL="http://example.com/fhir/StructureDefinition/$(uuidgen | tr '[:upper:]' '[:lower:]')"
+
+observation() {
+cat <<END
+{
+  "resourceType": "Observation",
+  "meta" : {
+    "profile" : [
+      "$PROFILE_URL|$1"
+    ]
+  }
+}
+END
+}
+
+create() {
+  curl -s -f -H "Content-Type: application/fhir+json" -H 'Accept: application/fhir+json' -d @- -o /dev/null "$BASE/Observation"
+}
+
+observation "1.2.3" | create
+observation "1.3.4" | create
+observation "2.1.6" | create
+
+search() {
+  curl -s -H "Content-Type: application/fhir+json" "$BASE/Observation?_profile$1=$PROFILE_URL$2&_summary=count" | jq -r .total
+}
+
+test "Observation below v1 count" "$(search ":below" "|1")" "2"
+test "Observation below v2 count" "$(search ":below" "|2")" "1"
+test "Observation below all count" "$(search ":below" "")" "3"
+# Patch version doesn't work with below
+test "Observation below v1.2.3 count" "$(search ":below" "|1.2.3")" "0"
+test "Observation exact v1.2.3 count" "$(search "" "|1.2.3")" "1"

.github/scripts/search-observation-profile.sh

@@ -1,11 +1,9 @@
 #!/bin/bash -e
 
+SCRIPT_DIR="$(dirname "$(readlink -f "$0")")"
+. "$SCRIPT_DIR/util.sh"
+
 BASE="http://localhost:8080/fhir"
 LAB_COUNT=$(curl -s "$BASE/Observation?_profile=http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab&_summary=count" | jq -r .total)
 
-if [ "$LAB_COUNT" = "27218" ]; then
-  echo "OK 👍: lab count ($LAB_COUNT) equals the expected count"
-else
-  echo "Fail 😞: lab count ($LAB_COUNT) != 27218"
-  exit 1
-fi
+test "lab count" "$LAB_COUNT" "27218"