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The RESTful API for the APE library (RESTful APE) allows users to interact with APE's automated pipeline exploration features through HTTP requests. APE automates the exploration of computational pipelines from large collections of computational tools.
Users can submit pipeline exploration requests to the APE server and receive results in JSON format. This interface allows interaction with APE via web browsers or any HTTP client and can be integrated into other applications.
In addition to APE's core feature of automated workflow composition, the API performs design-time benchmarking of workflows by aggregating tool-specific information such as licenses and citations for better workflow comparison.
RESTful APE is packaged in a Docker image.
Overall, the RESTful API for APE provides a flexible way to leverage APE's capabilities in scientific workflows.
RESTful API for the APE library, based on Spring Boot.
To run the Spring Boot directly, you can run the following cmd:
mvn spring-boot:run
Alternatively, you can build the jar package
mvn clean package
and then run the jar package
java -jar target/restape-[version].jar
OpenAPI documentation is available at
[host]:[port]]/swagger-ui/index.html
If the APE version you wish to use is not available on the Mvn repository you can install APE in your local repository and use it to build the back-end. To do so, download or compile the APE version you wish to use. In the location where you have the resulting APE.jar file, run the following command:
mvn install:install-file -Dfile=APE-<version>.jarThis adds the specified APE file to your local Maven repository. You can now build the back-end using:
mvn package -DskipTests=true